Report for Sequence Feature Glyma08g19660
Feature Type: gene_model
Chromosome: Gm08
Start: 14853386
stop: 14856071
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g19660
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G25260 AT
Annotation by Michelle Graham. TAIR10: Ribosomal protein L10 family protein | chr1:8854163-8855766 REVERSE LENGTH=235
SoyBase E_val: 2.00E-116 ISS
GO:0001510 GO-bp
Annotation by Michelle Graham. GO Biological Process: RNA methylation
SoyBase N/A ISS
GO:0006412 GO-bp
Annotation by Michelle Graham. GO Biological Process: translation
SoyBase N/A ISS
GO:0042254 GO-bp
Annotation by Michelle Graham. GO Biological Process: ribosome biogenesis
SoyBase N/A ISS
GO:0005622 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: intracellular
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005829 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytosol
SoyBase N/A ISS
GO:0005840 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: ribosome
SoyBase N/A ISS
GO:0022626 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome
SoyBase N/A ISS
GO:0003735 GO-mf
Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome
SoyBase N/A ISS
KOG0816
KOG
Protein involved in mRNA turnover
JGI ISS
PTHR21141 Panther
60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER
JGI ISS
PTHR21141:SF1 Panther
MRNA TURNOVER PROTEIN 4 MRT4
JGI ISS
PF00466 PFAM
Ribosomal protein L10
JGI ISS
UniRef100_A2Q489 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Ribosomal protein L10 n=1 Tax=Medicago truncatula RepID=A2Q489_MEDTR
SoyBase E_val: 1.00E-138 ISS
UniRef100_I1KUJ6 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KUJ6_SOYBN
SoyBase E_val: 1.00E-166 ISS
Expression Patterns of Glyma08g19660
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma08g19660
Paralog Evidence Comments
Glyma15g05360 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g19660 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g184300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g19660
Coding sequences of Glyma08g19660
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g19660.1 sequence type=CDS gene model=Glyma08g19660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCCAAAATCCAAGAGAAATAGACAAGTTACGCTTTCAAAGACGAAGAAAAAGGGAAGAGACCACAAAGAGACGATAGTGAACGGAATAAAAGATGCTGCAGAAAAGTACGGGCACGTGTACGTGTTCTCTTTCGAGAACATGAGGAATCAGAAATTCAAGGAGTTCAGGGACCAGTTGAAATCGAGTAGCAGGTTCTTTCTCGGCTCTAACAAAGTAATGCAAGTTGCTTTAGGTCGCTCTGCTTCGGATGAGATCAGACCCGGCCTTCATAAGGTTTCAAAGCTATTGCGTGGAGATTCTGGGATGGTTTTCACCAATTTGTCAAAGGAAGAAGTTGAAAGGCTGTTTAAAGAATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAGGTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCTTTTCTCAGGAAGCAAGGCATGCCTGTTCGGTTAAATAAAGGAGTTGTGGAGCTTGTTTCGGATTTTGTTGTTTGTGAGGAAGGAAAGCCTTTGTCACCCGAGGCTTCTCGTATACTGCGTTTAATGGGAATCAAGATGGCTACATTTCGACTTAGCTTAATTTGCAGATGGAGTCCCGATGAGTTTGAACTTTACATCGATGGACCAGATGAATCAGATATCGAATGCTCGTAG
Predicted protein sequences of Glyma08g19660
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g19660.1 sequence type=predicted peptide gene model=Glyma08g19660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MPKSKRNRQVTLSKTKKKGRDHKETIVNGIKDAAEKYGHVYVFSFENMRNQKFKEFRDQLKSSSRFFLGSNKVMQVALGRSASDEIRPGLHKVSKLLRGDSGMVFTNLSKEEVERLFKEFEEYDFARTGSNATEKVDLKEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPEASRILRLMGIKMATFRLSLICRWSPDEFELYIDGPDESDIECS*