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Report for Sequence Feature Glyma08g19660

Feature Type:gene_model
Chromosome:Gm08
Start:14853386
stop:14856071
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g19660
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G25260AT Annotation by Michelle Graham. TAIR10: Ribosomal protein L10 family protein | chr1:8854163-8855766 REVERSE LENGTH=235 SoyBaseE_val: 2.00E-116ISS
GO:0001510GO-bp Annotation by Michelle Graham. GO Biological Process: RNA methylation SoyBaseN/AISS
GO:0006412GO-bp Annotation by Michelle Graham. GO Biological Process: translation SoyBaseN/AISS
GO:0042254GO-bp Annotation by Michelle Graham. GO Biological Process: ribosome biogenesis SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0005840GO-cc Annotation by Michelle Graham. GO Cellular Compartment: ribosome SoyBaseN/AISS
GO:0022626GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome SoyBaseN/AISS
GO:0003735GO-mf Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome SoyBaseN/AISS
KOG0816 KOG Protein involved in mRNA turnover JGI ISS
PTHR21141Panther 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER JGI ISS
PTHR21141:SF1Panther MRNA TURNOVER PROTEIN 4 MRT4 JGI ISS
PF00466PFAM Ribosomal protein L10 JGI ISS
UniRef100_A2Q489UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ribosomal protein L10 n=1 Tax=Medicago truncatula RepID=A2Q489_MEDTR SoyBaseE_val: 1.00E-138ISS
UniRef100_I1KUJ6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KUJ6_SOYBN SoyBaseE_val: 1.00E-166ISS

Expression Patterns of Glyma08g19660
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g19660
ParalogEvidenceComments
Glyma15g05360 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g19660 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g184300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g19660
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g19660
>Glyma08g19660.1   sequence type=CDS   gene model=Glyma08g19660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCAAAATCCAAGAGAAATAGACAAGTTACGCTTTCAAAGACGAAGAAAAAGGGAAGAGACCACAAAGAGACGATAGTGAACGGAATAAAAGATGCTGCAGAAAAGTACGGGCACGTGTACGTGTTCTCTTTCGAGAACATGAGGAATCAGAAATTCAAGGAGTTCAGGGACCAGTTGAAATCGAGTAGCAGGTTCTTTCTCGGCTCTAACAAAGTAATGCAAGTTGCTTTAGGTCGCTCTGCTTCGGATGAGATCAGACCCGGCCTTCATAAGGTTTCAAAGCTATTGCGTGGAGATTCTGGGATGGTTTTCACCAATTTGTCAAAGGAAGAAGTTGAAAGGCTGTTTAAAGAATTTGAGGAGTATGACTTTGCAAGAACAGGAAGCAATGCCACTGAAAAGGTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCTTTTCTCAGGAAGCAAGGCATGCCTGTTCGGTTAAATAAAGGAGTTGTGGAGCTTGTTTCGGATTTTGTTGTTTGTGAGGAAGGAAAGCCTTTGTCACCCGAGGCTTCTCGTATACTGCGTTTAATGGGAATCAAGATGGCTACATTTCGACTTAGCTTAATTTGCAGATGGAGTCCCGATGAGTTTGAACTTTACATCGATGGACCAGATGAATCAGATATCGAATGCTCGTAG
Predicted protein sequences of Glyma08g19660
>Glyma08g19660.1   sequence type=predicted peptide   gene model=Glyma08g19660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPKSKRNRQVTLSKTKKKGRDHKETIVNGIKDAAEKYGHVYVFSFENMRNQKFKEFRDQLKSSSRFFLGSNKVMQVALGRSASDEIRPGLHKVSKLLRGDSGMVFTNLSKEEVERLFKEFEEYDFARTGSNATEKVDLKEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEGKPLSPEASRILRLMGIKMATFRLSLICRWSPDEFELYIDGPDESDIECS*






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