Glyma08g19640 - SoyBase

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Report for Sequence Feature Glyma08g19640

Feature Type:	gene_model
Chromosome:	Gm08
Start:	14827136
stop:	14831199
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g19640

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G15200	AT	Annotation by Michelle Graham. TAIR10: protein-protein interaction regulator family protein \| chr1:5228477-5231017 REVERSE LENGTH=423	SoyBase	E_val: 2.00E-157	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG3756	KOG	Pinin (desmosome-associated protein)	JGI		ISS
PTHR12707	Panther	PINN	JGI		ISS
PF04696	PFAM	pinin/SDK/memA/ protein conserved region	JGI		ISS
UniRef100_A2Q483	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pinin/SDK/memA protein n=1 Tax=Medicago truncatula RepID=A2Q483_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KUJ2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KUJ2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g19640

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g19640

Paralog	Evidence	Comments
Glyma15g05410	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g19640 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g184100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g19640

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g19640

Limit To All Plant Sequences

>Glyma08g19640.1   sequence type=CDS   gene model=Glyma08g19640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGTGGAGAAGACGGAGCAAGAACTCCGCAACGAGATCGATGAGCTTCTTCGCCAACAGCGCGAGATTTCGGAAAGGCTTCGAGATCCTCGAGGTCTTCGCAGAGGTGCCTTGCCGGGTCCTCCTGCTCTCCGCACTAACGGTGTTCGCCAACGACCCTTTATTCGCCCTGGAGACAGGAACGATTCTGAAGATCAACCTCCTTCCAAGCGTCGACTTTCATCTGCCGTCGTTAAGGTGGATGATGGGGACTTGCCTGAAGATGCTGATGCAGGACAAGAAGATGGAAAGACAAAGGATTTGACTAATGAAGCTGTCAATGGGACAGCTGCACTGGTCCAGAATGATAGCAACCCTTTCAATTCTCACCAAAGTGGATGGTCTAAGAGAGATATCAGCAATCAAAAAACTTCAAAGGCTTCTGACGTTCCTAATACAGATCATGTTCCAAGGGTATTGCCTAAGAATGAGGATCCAAGTTTGGTTAATAGGAACAAAAGAATGTTGGGCCAGCTTTTGGGAACTCTCGAGAAATTCCGAAAGGAAGACATGCAACTCTCAGGAACAGAGGCATATATGCGAAGATCTAATTCCTTGCAAAGAGCTGAGCAAAGGGCTCGTGAAGAAAGTGAAAGGCTTAGGAAAGAAGAGCGTGAACAGATTGCTGAAAAACGAAGGAGAGACTTGACTCTCAGGGCTCGTGTGGCTGCTAAGACAGAAGAAAAGAAATTGGAGCTGCTGTTTCTTCAGTGGAGTGAGCATCGTAAAAGACTAAGCAATTTTATAAGGACTAAAGCAGAGCCTCCAATCTACTATTTGCCTAACAAGCCCTTGGATGAAGATCCTACATTACTTGAGAAGCGCAAAGAAGAGGCTTTCCTTGAATGGAAGAATGCTAGAAGAGAGGAAGTGTCTGAGTATCAGAAACAGATTGGGGAGCAGTATCTTGCCAATGTTGAGAAGGAATTGGAGAGATGGCAGAATGCAAGAAATGCAAGGAAAGTAAACAATGACCAAAATTTGCAGGAGACAATGGACAAAGAGTTGGATACTCATAGGCTGGAGCATGGCCCCAAGAAAAGAAAGATCCCAGACGGAAACAATAATGAAGATGATGATGATGTGGAAGATATAAATGTGGGAGAGGATGACATGATGGATGATGAATTAGATGATGATTCTGGTAGGAGGATTGATGATACAACTAAGACGGAAGCAGGTAATGCCAGCACAGATCCTGTGGCTGATGGCGAGAATGCGGAAGGGAAGTGA

Predicted protein sequences of Glyma08g19640

Limit To All Plant Sequences

>Glyma08g19640.1   sequence type=predicted peptide   gene model=Glyma08g19640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVEKTEQELRNEIDELLRQQREISERLRDPRGLRRGALPGPPALRTNGVRQRPFIRPGDRNDSEDQPPSKRRLSSAVVKVDDGDLPEDADAGQEDGKTKDLTNEAVNGTAALVQNDSNPFNSHQSGWSKRDISNQKTSKASDVPNTDHVPRVLPKNEDPSLVNRNKRMLGQLLGTLEKFRKEDMQLSGTEAYMRRSNSLQRAEQRAREESERLRKEEREQIAEKRRRDLTLRARVAAKTEEKKLELLFLQWSEHRKRLSNFIRTKAEPPIYYLPNKPLDEDPTLLEKRKEEAFLEWKNARREEVSEYQKQIGEQYLANVEKELERWQNARNARKVNNDQNLQETMDKELDTHRLEHGPKKRKIPDGNNNEDDDDVEDINVGEDDMMDDELDDDSGRRIDDTTKTEAGNASTDPVADGENAEGK*

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