Glyma08g19630 - SoyBase

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Report for Sequence Feature Glyma08g19630

Feature Type:	gene_model
Chromosome:	Gm08
Start:	14820284
stop:	14821868
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g19630

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G01080	AT	Annotation by Michelle Graham. TAIR10: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family \| chr2:78038-79176 FORWARD LENGTH=231	SoyBase	E_val: 6.00E-67	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF03168	PFAM	Late embryogenesis abundant protein	JGI		ISS
UniRef100_Q9SJV8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Arabidopsis thaliana RepID=Q9SJV8_ARATH	SoyBase	E_val: 3.00E-64	ISS
UniRef100_UPI0002338FD2	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002338FD2 related cluster n=1 Tax=unknown RepID=UPI0002338FD2	SoyBase	E_val: 5.00E-162	ISS

Expression Patterns of Glyma08g19630

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g19630

Paralog	Evidence	Comments
Glyma15g05420	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g19630 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g184000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g19630

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g19630

Limit To All Plant Sequences

>Glyma08g19630.1   sequence type=CDS   gene model=Glyma08g19630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCACCCCAAGAGGAAACCACCACCCACAGCCTAACGGTGAGCGAAGAAGACAATGGCCACCGCCACAGCCACCAGCAGCGGCACCGGAAGCGGCAGCGGCACCGACAGCAGTAGCCGCAAATTACAATGGATACCGACAGTACCACCCGACAACGCCAGCTCGTTCGTCGTCGTCGGCGTCGTTCAAAGGATGCTGTTGCTGTCTGTTCCTTCTATTCTCGTTCCTGGCGCTGTTGGTGCTAGCGGTGGTGCTGGTAATAATCCTAGCGGTGAAGCCGAAGAAGCCGCAGTTCGATCTGGAGCAAGTCGGGGTGCAGTACATGGGCATCACACCCAATTCCCCCTCCACCGCTTCCCTGTCTCTCACCATTCGCCTCCTCTTCGCCGCCACCAACCCCAACAAGGTCGGGATCAGGTACGGCCAGTCCAGCTTCACCGTCATGTACCGCGGCATCCCCCTCGGAAAAGCCACCGTCCCCGGCTTCTTCCAGCAACCTCACAGCACCCGACAGGTGATCGCCACCATCGCCGTCGATCGCGTCAATTTGCTTCAGGCGGACGCCGCCGATTTGATCCGAGACGCCTCCCTCAACGACCGAGTCGACCTGAGAGTCTTGGGAGACGTTGCTGCCAAGATCCGCGTCATCAACTTCGATTCTCCTGCTGTTCAGTTTTCTGCGACACCGCTGGATCACATTCACTTATTTTTGGATACATCTTTCGGGCTGTTCCTTTCCACTTTTTTGTTTTTTCGTTTATGTTTATTCCCCCTCTCATAG

Predicted protein sequences of Glyma08g19630

Limit To All Plant Sequences

>Glyma08g19630.1   sequence type=predicted peptide   gene model=Glyma08g19630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTTPRGNHHPQPNGERRRQWPPPQPPAAAPEAAAAPTAVAANYNGYRQYHPTTPARSSSSASFKGCCCCLFLLFSFLALLVLAVVLVIILAVKPKKPQFDLEQVGVQYMGITPNSPSTASLSLTIRLLFAATNPNKVGIRYGQSSFTVMYRGIPLGKATVPGFFQQPHSTRQVIATIAVDRVNLLQADAADLIRDASLNDRVDLRVLGDVAAKIRVINFDSPAVQFSATPLDHIHLFLDTSFGLFLSTFLFFRLCLFPLS*

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