Glyma08g19620 - SoyBase

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Report for Sequence Feature Glyma08g19620

Feature Type:	gene_model
Chromosome:	Gm08
Start:	14814638
stop:	14817111
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g19620

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G14110	AT	Annotation by Michelle Graham. TAIR10: COP9 signalosome, subunit CSN8 \| chr4:8133049-8134867 REVERSE LENGTH=197	SoyBase	E_val: 1.00E-104	ISS
GO:0000085	GO-bp	Annotation by Michelle Graham. GO Biological Process: G2 phase of mitotic cell cycle	SoyBase	N/A	ISS
GO:0000338	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein deneddylation	SoyBase	N/A	ISS
GO:0006626	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to mitochondrion	SoyBase	N/A	ISS
GO:0009416	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to light stimulus	SoyBase	N/A	ISS
GO:0009640	GO-bp	Annotation by Michelle Graham. GO Biological Process: photomorphogenesis	SoyBase	N/A	ISS
GO:0009753	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus	SoyBase	N/A	ISS
GO:0010387	GO-bp	Annotation by Michelle Graham. GO Biological Process: signalosome assembly	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008180	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: signalosome	SoyBase	N/A	ISS
GO:0004222	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metalloendopeptidase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG4414	KOG	COP9 signalosome, subunit CSN8	JGI		ISS
PTHR13339	Panther	COP9 SIGNALOSOME COMPLEX SUBUNIT 8	JGI		ISS
PF10075	PFAM	COP9 signalosome, subunit CSN8	JGI		ISS
UniRef100_G7IL66	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: COP9 signalosome complex subunit n=1 Tax=Medicago truncatula RepID=G7IL66_MEDTR	SoyBase	E_val: 7.00E-115	ISS
UniRef100_I1KUI9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KUI9_SOYBN	SoyBase	E_val: 5.00E-143	ISS

Expression Patterns of Glyma08g19620

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g19620 not represented in the dataset	Glyma08g19620 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g19620

Paralog	Evidence	Comments
Glyma15g05430	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g19620 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g183900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g19620

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g19620

Limit To All Plant Sequences

>Glyma08g19620.2   sequence type=transcript   gene model=Glyma08g19620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGTTTTCACTCGCGTCGAATTGAGGTACCGTATGGCTACGGTAGTGCCGTGTTTGGTTGCGTAAAACAACTCGCGTTAACTGGTTTTTTTTAATCGAGGTTAGCTTCTTTGGTTTTTTTGCTGCTATAGGAATTGGGAGTGATGGATTTCTCTTCGGTGAGGGCTGCGTTGGATTCGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCACCTCCTCTCTCACATTTATGTTCACGACATGTATCTCTCTTCACTTTTTCCCGCTTTACATGTCAATCAAATGAATAATACTATTACTTTACTCACATTTTTTATTGAAATAAATAAATTCTGTTTTACAATTGATTGATCTTTTATGTATTTATGTCAATTTGGAAGTGCTGCTGTGATTTTGTGTGCAGCAATAGTGCGCGCTTTCTTTGGAAGTCAATACCTTCCTCAATCAAAGAGAGCCAGCCTGAAGTCACCGCGGTTTGGAAAATTGGTCAGAAGCTCTGGTTACGTGACTATGCCGGAGTGCACGAGGCAATCCGTGGCTTTGATTGGACTCAGGAACTCCAAACCCTAGTTGCTGCATTTTCAGAACTTTACACAAAGGAGATGTTTCAGCTGCTTCTCTCTGCTTATTCTACGATAAGCATTAAAGACACTGCTTTATTTCTGGGAATGAATGAGGATGATGCTACAAATTATGTTTTGCAGCAAGGCTGGACTGTGGACCCTGCCTCTCAGATGCTTATTGTGAAGAAGCAACCTGTTGTGACAGAGCAGAAACTTGATCCGAGTAAATTGCAGCGATTGACAGAATATGTCTTCCATCTTGAGCATTGAAGCTTTTAATTATGTAGGAATTAGAAGTTTTATTTTCTAAAATATTCTCAAATTGATCAATCATATGTTCTATGTTCTTGAAGATGCGTGAAAGTGCATATAACCTGTTGATAATTTTGTAGCTGACCCTGTATGTGTTTGAACTTTAGCACTGATTGGTGAAATTTGCATCTCACTTGGTATTTATTCACATTGCCTCTCTCAATGTCTCTTATATGACAGTGGAACAGTTACAAA

>Glyma08g19620.3   sequence type=transcript   gene model=Glyma08g19620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGCTACGGTAGTGCCGTGTTTGGTTGCGTAAAACAACTCGCGTTAACTGGTTTTTTTTAATCGAGGTTAGCTTCTTTGGTTTTTTTGCTGCTATAGGAATTGGGAGTGATGGATTTCTCTTCGGTGAGGGCTGCGTTGGATTCGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAGGTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCACCTCCTCTCTCACATTTATGTTCACGACATGTATCTCTCTTCACTTTTTCCCGCTTTACATGTCAATCAAATGAATAATACTATTACTTTACTCACATTTTTTATTGAAATAAATAAATTCTGTTTTACAATTGATTGATCTTTTATGTATTTATGTCAATTTGGAAGTGCTGCTGTGATTTTGTGTGCAGCAATAGTGCGCGCTTTCTTTGGAAGTCAATACCTTCCTCAATCAAAGAGAGCCAGCCTGAAGTCACCGCGGTTTGGAAAATTGGTCAGAAGCTCTGGTTACGTGACTATGCCGGAGTGCACGAGGCAATCCGTGGCTTTGATTGGACTCAGGAACTCCAAACCCTAGTTGCTGCATTTTCAGAACTTTACACAAAGGAGATGTTTCAGCTGCTTCTCTCTGCTTATTCTACGATAAGCATTAAAGACACTGCTTTATTTCTGGGAATGAATGAGGATGATGCTACAAATTATGTTTTGCAGCAAGGCTGGACTGTGGACCCTGCCTCTCAGATGCTTATTGTGAAGAAGCAACCTGTTGTGACAGAGCAGAAACTTGATCCGAGTAAATTGCAGCGATTGACAGAATATGTCTTCCATCTTGAGCATTGAAGCTTTTAATTATGTAGGAATTAGAAGTTTTATTTTCTAAAATATTCTCAAATTGATCAATCATATGTTCTATGTTCTTGAAGATGCGTGAAAGTGCATATAACCTGTTGATAATTTTGTAGCTGACCCTGTATGTGTTTGAACTTTAGCACTGATTGGTGAAATTTGCATCTCACTTGGTATTTATTCACATTGCCTCTCTCAATGTCTCTTATATGACAGTGGAACAGTTACAAA

>Glyma08g19620.4   sequence type=transcript   gene model=Glyma08g19620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGTTTTCACTCGCGTCGAATTGAGGAATTGGGAGTGATGGATTTCTCTTCGGTGAGGGCTGCGTTGGATTCGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAGGTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCACCTCCTCTCTCACATTTATGTTCACGACATCAATAGTGCGCGCTTTCTTTGGAAGTCAATACCTTCCTCAATCAAAGAGAGCCAGCCTGAAGTCACCGCGGTTTGGAAAATTGGTCAGAAGCTCTGGTTACGTGACTATGCCGGAGTGCACGAGGCAATCCGTGGCTTTGATTGGACTCAGGAACTCCAAACCCTAGTTGCTGCATTTTCAGAACTTTACACAAAGGAGATGTTTCAGCTGCTTCTCTCTGCTTATTCTACGATAAGCATTAAAGACACTGCTTTATTTCTGGGAATGAATGAGGATGATGCTACAAATTATGTTTTGCAGCAAGGCTGGACTGTGGACCCTGCCTCTCAGATGCTTATTGTGAAGAAGCAACCTGTTGTGACAGAGCAGAAACTTGATCCGAGTAAATTGCAGCGATTGACAGAATATGTCTTCCATCTTGAGCATTGAAGCTTTTAATTATGTAGGAATTAGAAGTTTTATTTTCTAAAATATTCTCAAATTGATCAATCATATGTTCTATGTTCTTGAAGATGCGTGAAAGTGCATATAACCTGTTGATAATTTTGTAGCTGACCCTGTATGTGTTTGAACTTTAGCACTGATTGGTGAAATTTGCATCTCACTTGGTATTTATTCACATTGCCTCTCTCAATGTCTCTTATATGACAGTGGAACAGTTACAAA

Coding sequences of Glyma08g19620

Limit To All Plant Sequences

>Glyma08g19620.1   sequence type=CDS   gene model=Glyma08g19620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTTCTCTTCGGTGAGGGCTGCGTTGGATTCGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAGGTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCACCTCCTCTCTCACATTTATGTTCACGACATCAATAGTGCGCGCTTTCTTTGGAAGTCAATACCTTCCTCAATCAAAGAGAGCCAGCCTGAAGTCACCGCGGTTTGGAAAATTGGTCAGAAGCTCTGGTTACGTGACTATGCCGGAGTGCACGAGGCAATCCGTGGCTTTGATTGGACTCAGGAACTCCAAACCCTAGTTGCTGCATTTTCAGAACTTTACACAAAGGAGATGTTTCAGCTGCTTCTCTCTGCTTATTCTACGATAAGCATTAAAGACACTGCTTTATTTCTGGGAATGAATGAGGATGATGCTACAAATTATGTTTTGCAGCAAGGCTGGACTGTGGACCCTGCCTCTCAGATGCTTATTGTGAAGAAGCAACCTGTTGTGACAGAGCAGAAACTTGATCCGAGTAAATTGCAGCGATTGACAGAATATGTCTTCCATCTTGAGCATTGA

>Glyma08g19620.2   sequence type=CDS   gene model=Glyma08g19620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAATTTGGAAGTGCTGCTGTGATTTTGTGTGCAGCAATAGTGCGCGCTTTCTTTGGAAGTCAATACCTTCCTCAATCAAAGAGAGCCAGCCTGAAGTCACCGCGGTTTGGAAAATTGGTCAGAAGCTCTGGTTACGTGACTATGCCGGAGTGCACGAGGCAATCCGTGGCTTTGATTGGACTCAGGAACTCCAAACCCTAGTTGCTGCATTTTCAGAACTTTACACAAAGGAGATGTTTCAGCTGCTTCTCTCTGCTTATTCTACGATAAGCATTAAAGACACTGCTTTATTTCTGGGAATGAATGAGGATGATGCTACAAATTATGTTTTGCAGCAAGGCTGGACTGTGGACCCTGCCTCTCAGATGCTTATTGTGAAGAAGCAACCTGTTGTGACAGAGCAGAAACTTGATCCGAGTAAATTGCAGCGATTGACAGAATATGTCTTCCATCTTGAGCATTGA

>Glyma08g19620.3   sequence type=CDS   gene model=Glyma08g19620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAATTTGGAAGTGCTGCTGTGATTTTGTGTGCAGCAATAGTGCGCGCTTTCTTTGGAAGTCAATACCTTCCTCAATCAAAGAGAGCCAGCCTGAAGTCACCGCGGTTTGGAAAATTGGTCAGAAGCTCTGGTTACGTGACTATGCCGGAGTGCACGAGGCAATCCGTGGCTTTGATTGGACTCAGGAACTCCAAACCCTAGTTGCTGCATTTTCAGAACTTTACACAAAGGAGATGTTTCAGCTGCTTCTCTCTGCTTATTCTACGATAAGCATTAAAGACACTGCTTTATTTCTGGGAATGAATGAGGATGATGCTACAAATTATGTTTTGCAGCAAGGCTGGACTGTGGACCCTGCCTCTCAGATGCTTATTGTGAAGAAGCAACCTGTTGTGACAGAGCAGAAACTTGATCCGAGTAAATTGCAGCGATTGACAGAATATGTCTTCCATCTTGAGCATTGA

>Glyma08g19620.4   sequence type=CDS   gene model=Glyma08g19620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTTCTCTTCGGTGAGGGCTGCGTTGGATTCGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAGGTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCACCTCCTCTCTCACATTTATGTTCACGACATCAATAGTGCGCGCTTTCTTTGGAAGTCAATACCTTCCTCAATCAAAGAGAGCCAGCCTGAAGTCACCGCGGTTTGGAAAATTGGTCAGAAGCTCTGGTTACGTGACTATGCCGGAGTGCACGAGGCAATCCGTGGCTTTGATTGGACTCAGGAACTCCAAACCCTAGTTGCTGCATTTTCAGAACTTTACACAAAGGAGATGTTTCAGCTGCTTCTCTCTGCTTATTCTACGATAAGCATTAAAGACACTGCTTTATTTCTGGGAATGAATGAGGATGATGCTACAAATTATGTTTTGCAGCAAGGCTGGACTGTGGACCCTGCCTCTCAGATGCTTATTGTGAAGAAGCAACCTGTTGTGACAGAGCAGAAACTTGATCCGAGTAAATTGCAGCGATTGACAGAATATGTCTTCCATCTTGAGCATTGA

Predicted protein sequences of Glyma08g19620

Limit To All Plant Sequences

>Glyma08g19620.1   sequence type=predicted peptide   gene model=Glyma08g19620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDFSSVRAALDSKSYDKVADVCDNLMLQVAAEGIAYQDDWPYTIHLLSHIYVHDINSARFLWKSIPSSIKESQPEVTAVWKIGQKLWLRDYAGVHEAIRGFDWTQELQTLVAAFSELYTKEMFQLLLSAYSTISIKDTALFLGMNEDDATNYVLQQGWTVDPASQMLIVKKQPVVTEQKLDPSKLQRLTEYVFHLEH*

>Glyma08g19620.2   sequence type=predicted peptide   gene model=Glyma08g19620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSIWKCCCDFVCSNSARFLWKSIPSSIKESQPEVTAVWKIGQKLWLRDYAGVHEAIRGFDWTQELQTLVAAFSELYTKEMFQLLLSAYSTISIKDTALFLGMNEDDATNYVLQQGWTVDPASQMLIVKKQPVVTEQKLDPSKLQRLTEYVFHLEH*

>Glyma08g19620.3   sequence type=predicted peptide   gene model=Glyma08g19620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSIWKCCCDFVCSNSARFLWKSIPSSIKESQPEVTAVWKIGQKLWLRDYAGVHEAIRGFDWTQELQTLVAAFSELYTKEMFQLLLSAYSTISIKDTALFLGMNEDDATNYVLQQGWTVDPASQMLIVKKQPVVTEQKLDPSKLQRLTEYVFHLEH*

>Glyma08g19620.4   sequence type=predicted peptide   gene model=Glyma08g19620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDFSSVRAALDSKSYDKVADVCDNLMLQVAAEGIAYQDDWPYTIHLLSHIYVHDINSARFLWKSIPSSIKESQPEVTAVWKIGQKLWLRDYAGVHEAIRGFDWTQELQTLVAAFSELYTKEMFQLLLSAYSTISIKDTALFLGMNEDDATNYVLQQGWTVDPASQMLIVKKQPVVTEQKLDPSKLQRLTEYVFHLEH*

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