Glyma08g19560 - SoyBase

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Report for Sequence Feature Glyma08g19560

Feature Type:	gene_model
Chromosome:	Gm08
Start:	14776683
stop:	14777782
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g19560

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G18740	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF793) \| chr1:6464125-6465273 FORWARD LENGTH=382	SoyBase	E_val: 8.00E-93	ISS
GO:0006612	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009611	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to wounding	SoyBase	N/A	ISS
GO:0009612	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to mechanical stimulus	SoyBase	N/A	ISS
GO:0009963	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of flavonoid biosynthetic process	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0010363	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF05633	PFAM	Protein of unknown function (DUF793)	JGI		ISS
UniRef100_I1KUH9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1KUH9_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9ST79	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: CAA303718.1 protein n=1 Tax=Oryza sativa RepID=Q9ST79_ORYSA	SoyBase	E_val: 7.00E-64	ISS

Expression Patterns of Glyma08g19560

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g19560 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g183300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g19560

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g19560

Limit To All Plant Sequences

>Glyma08g19560.2   sequence type=CDS   gene model=Glyma08g19560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCTCTACTGATAATCATTGTCCTTCTTCACAAATTTCCTCCTTTGTCCACTCTATATATTGTCTCAGGCTGGAACTAGTTCATTCTTTGGAAGAGAATCAAGGATCCATTACCCAGGATTCGGAGCTTGAACCATTCCAAAAACAGGTTACTGATCGATTCGAGGACCTGTCCAGGGTTAGTGATGATGAATTGCTGTCAATTGATTGGATGCGGAAGCTCATGGATGCATTTATCTGCTGTCATGAGGAATTCAGGGCCATTCTGTTGAACAATAAAGAGCAGGTCCTGAATTCCCCTATGGTTCAATCAATCTCTGATTTCTTCGAGAGGTTGTCATTGTGTGCCTTGGGTTCTAATCAGAGAGCATTGAGTGAAGGCCAAGTCCAGAGGGCTAGAAAGGCACTGATGGATTTAGCACTGGCAATGCTTAATGAGAACGGTTGTAAGTCAGTTTTTACTCAGCGTAACAGATCTTTTGGGAGGCATAACACTAGCAAGGATCACCGTCACCACTTGATAGCGCATACTGGATCAAATTCATGGACTGTATTCCGATCCTGGTCTGCAGCCAAGCAACTGCATTCCATTGCAAGCAACTTGGTTCCCCCTCGTGGGAACGAAATTGTTTCAACAAGTGGGCTTGCAATTCCTGTTTATACTATGAATTCTGTTCTCTTGTTTGTTTTGTGGACTCTTGTTGCAGCTATTCCTTCTCAGGATAGAGGTCTCAACATCGAGTTGTCTCGAAAAAGCTCAAATGGTTTGCTGAAGGAGATTAATCAAGTTGAAAGTTGTGTCCGGAATATGACTGACTTGGTAGATTCGATTCAGTTTCCATTGACGGATGAGCAGAAAATGGAAGCTGATCAGAGGCTGAAGGAGCTAAGTCTTGTTTGTGGAGCCTTAAGACATGGATTGGATCCATTGGAGCTCCAAGTGAGGGAGGTGTTCCGGAAGATTATGACATGCCGAGCTGAGGGGCTTGATTACCTAGGCTAG

Predicted protein sequences of Glyma08g19560

Limit To All Plant Sequences

>Glyma08g19560.2   sequence type=predicted peptide   gene model=Glyma08g19560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSTDNHCPSSQISSFVHSIYCLRLELVHSLEENQGSITQDSELEPFQKQVTDRFEDLSRVSDDELLSIDWMRKLMDAFICCHEEFRAILLNNKEQVLNSPMVQSISDFFERLSLCALGSNQRALSEGQVQRARKALMDLALAMLNENGCKSVFTQRNRSFGRHNTSKDHRHHLIAHTGSNSWTVFRSWSAAKQLHSIASNLVPPRGNEIVSTSGLAIPVYTMNSVLLFVLWTLVAAIPSQDRGLNIELSRKSSNGLLKEINQVESCVRNMTDLVDSIQFPLTDEQKMEADQRLKELSLVCGALRHGLDPLELQVREVFRKIMTCRAEGLDYLG*

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