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Report for Sequence Feature Glyma08g19510

Feature Type:gene_model
Chromosome:Gm08
Start:14754947
stop:14756640
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g19510
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G25275AT Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr1:8860719-8861156 FORWARD LENGTH=85 SoyBaseE_val: 2.00E-14ISS
GO:0009627GO-bp Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance SoyBaseN/AISS
GO:0031347GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of defense response SoyBaseN/AISS
GO:0080167GO-bp Annotation by Michelle Graham. GO Biological Process: response to karrikin SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_B9DG55UniRef Annotation by Michelle Graham. Most informative UniRef hit: AT1G25275 protein n=1 Tax=Arabidopsis thaliana RepID=B9DG55_ARATH SoyBaseE_val: 8.00E-12ISS
UniRef100_I1KUH4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KUH4_SOYBN SoyBaseE_val: 8.00E-46ISS

Expression Patterns of Glyma08g19510
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g19510
ParalogEvidenceComments
Glyma15g05510 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g19510 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g183000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g19510
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g19510
>Glyma08g19510.1   sequence type=CDS   gene model=Glyma08g19510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAAGATGGTGGCTGCAATGATGCTTTTTCTTCTCATTTCTACGCAAATGAAGAGCGTTGAGCCGGATGCTGCGGATTGCTTGGATGGTTGCAGTACTGCCTGTGTTCAAAGCGACTCGAGGCTTCAAGCACGGTGTGAACGCAAATGCAGCATTAGATGCGGTCCAGGTAACCAACCTAATCCCAAATATTTATTCTTCAAACTTATAATGCTATAG
Predicted protein sequences of Glyma08g19510
>Glyma08g19510.1   sequence type=predicted peptide   gene model=Glyma08g19510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKKMVAAMMLFLLISTQMKSVEPDAADCLDGCSTACVQSDSRLQARCERKCSIRCGPGNQPNPKYLFFKLIML*






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