Glyma08g19500 - SoyBase

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Report for Sequence Feature Glyma08g19500

Feature Type:	gene_model
Chromosome:	Gm08
Start:	14749461
stop:	14752388
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g19500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G25270	AT	Annotation by Michelle Graham. TAIR10: nodulin MtN21 /EamA-like transporter family protein \| chr1:8857726-8859909 FORWARD LENGTH=355	SoyBase	E_val: 9.00E-90	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
PF00892	PFAM	EamA-like transporter family	JGI		ISS
UniRef100_G7IL77	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Auxin-induced protein 5NG4 n=1 Tax=Medicago truncatula RepID=G7IL77_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KUH3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KUH3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g19500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g19500

Paralog	Evidence	Comments
Glyma15g05520	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g19500 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g182900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g19500

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g19500

Limit To All Plant Sequences

>Glyma08g19500.1   sequence type=CDS   gene model=Glyma08g19500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTAGAAATGAAGGGCATATGTAATGTGTTGCATGGGTTGAAACCAGTGTTGCTGATGGTGTTAGTGCAAATTGCATATACTGCTGTCAATGTGCTTTTCAAGCTCGCCATAAACGACGGAATGAGTGTAAAGGTTGCCACAGCATATCGCCTCACTTTTGGATCTGCTTTCACTGTTCCTCTCGCTCTCATTTCTGAAAGGAACAAAAGACCAAAGATGACTTGGAGGGTGCTTTTCATGGCATGTCTTTGTGGCTTATTCGGGGGAAGTTTATTTCAAAACCTTTTCTATGAGTCCTTGGCTTTAACATCAGCAACGTTTGCGTCCGCTCTCTACAACCTCATTCCAGCCATTACCTTTGTCTTGGCCATCTCCTGCGGTTTCGAAAGGTTAAATTTGAGGGTGGCAGCAGGAAGGGCCAAGGTGTTGGGAACTTTACTTGGAATTGGTGGAGCAATGTTGTTGACCTTTATCAAAGGGGCAGAAATTAATATCTGGCCTTTCCACATCAACCTTATGCATCCAGATCAGCACCAAAACAGCCACGTGGCATCATTAAATACTGACTCTGGCAATAATAAGTTGTTGGGAGCAATTTGCTCCCTAGCAAGCTGCTTCTCTTTTGCTTTGTGGCTCACCATTCAGGCTAAGATGAGCAAAGAATACCCATGTCACTACTCAAGCACGGCTCTTATGTCTACAGCGGGAGCAATACAAGCCACTGCTTTTGGTTTCTGTTTTGAGAGGGATTTGACCCAATGGAAGTTGGGTTGGAATATTCGGCTACTGGCTGTGGCTTATTCGGGAATCGTGGCCTCTGGAATAGTTGTAATTATAACTGCGTGGTGCATACAGATGAGAGGGCCTCTGTTTGCGTCTGTTTTCAACCCTCTAATGCTTGTGCTTGTGGCTATTGCCGGTTCTTTGATGTTGAATGAGAACTTATACGTAGGAAGTGTGGTTGGAGCAGTGCTGATTGTGTGTGGGCTGTACATGGTTCTGTGGGGTAAAAGTAAAGAGATGAAAAATATTACTCAGTTAGTACCATCAGAAACCATCCGAGAAGCTGAAGCCATAGAAGTTGTTGTCATGTCCATTTCCACACCAATAGATTATGAAAAATGTGACCAAAACAACCAAGGCGAAAGGAATGTTGACAAAGAAGATTGTGACGATTTGACAAAAAACAAGGAAGAAGATGATATTGGCATATAG

Predicted protein sequences of Glyma08g19500

Limit To All Plant Sequences

>Glyma08g19500.1   sequence type=predicted peptide   gene model=Glyma08g19500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVEMKGICNVLHGLKPVLLMVLVQIAYTAVNVLFKLAINDGMSVKVATAYRLTFGSAFTVPLALISERNKRPKMTWRVLFMACLCGLFGGSLFQNLFYESLALTSATFASALYNLIPAITFVLAISCGFERLNLRVAAGRAKVLGTLLGIGGAMLLTFIKGAEINIWPFHINLMHPDQHQNSHVASLNTDSGNNKLLGAICSLASCFSFALWLTIQAKMSKEYPCHYSSTALMSTAGAIQATAFGFCFERDLTQWKLGWNIRLLAVAYSGIVASGIVVIITAWCIQMRGPLFASVFNPLMLVLVAIAGSLMLNENLYVGSVVGAVLIVCGLYMVLWGKSKEMKNITQLVPSETIREAEAIEVVVMSISTPIDYEKCDQNNQGERNVDKEDCDDLTKNKEEDDIGI*

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