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Report for Sequence Feature Glyma08g19500

Feature Type:gene_model
Chromosome:Gm08
Start:14749461
stop:14752388
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G25270AT Annotation by Michelle Graham. TAIR10: nodulin MtN21 /EamA-like transporter family protein | chr1:8857726-8859909 FORWARD LENGTH=355 SoyBaseE_val: 9.00E-90ISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
PF00892PFAM EamA-like transporter family JGI ISS
UniRef100_G7IL77UniRef Annotation by Michelle Graham. Most informative UniRef hit: Auxin-induced protein 5NG4 n=1 Tax=Medicago truncatula RepID=G7IL77_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1KUH3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KUH3_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma15g05520 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g182900 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma08g19500.1   sequence type=CDS   gene model=Glyma08g19500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTAGAAATGAAGGGCATATGTAATGTGTTGCATGGGTTGAAACCAGTGTTGCTGATGGTGTTAGTGCAAATTGCATATACTGCTGTCAATGTGCTTTTCAAGCTCGCCATAAACGACGGAATGAGTGTAAAGGTTGCCACAGCATATCGCCTCACTTTTGGATCTGCTTTCACTGTTCCTCTCGCTCTCATTTCTGAAAGGAACAAAAGACCAAAGATGACTTGGAGGGTGCTTTTCATGGCATGTCTTTGTGGCTTATTCGGGGGAAGTTTATTTCAAAACCTTTTCTATGAGTCCTTGGCTTTAACATCAGCAACGTTTGCGTCCGCTCTCTACAACCTCATTCCAGCCATTACCTTTGTCTTGGCCATCTCCTGCGGTTTCGAAAGGTTAAATTTGAGGGTGGCAGCAGGAAGGGCCAAGGTGTTGGGAACTTTACTTGGAATTGGTGGAGCAATGTTGTTGACCTTTATCAAAGGGGCAGAAATTAATATCTGGCCTTTCCACATCAACCTTATGCATCCAGATCAGCACCAAAACAGCCACGTGGCATCATTAAATACTGACTCTGGCAATAATAAGTTGTTGGGAGCAATTTGCTCCCTAGCAAGCTGCTTCTCTTTTGCTTTGTGGCTCACCATTCAGGCTAAGATGAGCAAAGAATACCCATGTCACTACTCAAGCACGGCTCTTATGTCTACAGCGGGAGCAATACAAGCCACTGCTTTTGGTTTCTGTTTTGAGAGGGATTTGACCCAATGGAAGTTGGGTTGGAATATTCGGCTACTGGCTGTGGCTTATTCGGGAATCGTGGCCTCTGGAATAGTTGTAATTATAACTGCGTGGTGCATACAGATGAGAGGGCCTCTGTTTGCGTCTGTTTTCAACCCTCTAATGCTTGTGCTTGTGGCTATTGCCGGTTCTTTGATGTTGAATGAGAACTTATACGTAGGAAGTGTGGTTGGAGCAGTGCTGATTGTGTGTGGGCTGTACATGGTTCTGTGGGGTAAAAGTAAAGAGATGAAAAATATTACTCAGTTAGTACCATCAGAAACCATCCGAGAAGCTGAAGCCATAGAAGTTGTTGTCATGTCCATTTCCACACCAATAGATTATGAAAAATGTGACCAAAACAACCAAGGCGAAAGGAATGTTGACAAAGAAGATTGTGACGATTTGACAAAAAACAAGGAAGAAGATGATATTGGCATATAG

>Glyma08g19500.1   sequence type=predicted peptide   gene model=Glyma08g19500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVEMKGICNVLHGLKPVLLMVLVQIAYTAVNVLFKLAINDGMSVKVATAYRLTFGSAFTVPLALISERNKRPKMTWRVLFMACLCGLFGGSLFQNLFYESLALTSATFASALYNLIPAITFVLAISCGFERLNLRVAAGRAKVLGTLLGIGGAMLLTFIKGAEINIWPFHINLMHPDQHQNSHVASLNTDSGNNKLLGAICSLASCFSFALWLTIQAKMSKEYPCHYSSTALMSTAGAIQATAFGFCFERDLTQWKLGWNIRLLAVAYSGIVASGIVVIITAWCIQMRGPLFASVFNPLMLVLVAIAGSLMLNENLYVGSVVGAVLIVCGLYMVLWGKSKEMKNITQLVPSETIREAEAIEVVVMSISTPIDYEKCDQNNQGERNVDKEDCDDLTKNKEEDDIGI*







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