Glyma08g19460 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma08g19460

Feature Type:	gene_model
Chromosome:	Gm08
Start:	14708944
stop:	14713399
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g19460

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G25270	AT	Annotation by Michelle Graham. TAIR10: nodulin MtN21 /EamA-like transporter family protein \| chr1:8857726-8859909 FORWARD LENGTH=355	SoyBase	E_val: 3.00E-100	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
PF00892	PFAM	EamA-like transporter family	JGI		ISS
UniRef100_G7IL80	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Auxin-induced protein 5NG4 n=1 Tax=Medicago truncatula RepID=G7IL80_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KUG9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KUG9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g19460

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g19460

Paralog	Evidence	Comments
Glyma15g05540	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g19460 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g182500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g19460

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g19460

Limit To All Plant Sequences

>Glyma08g19460.3   sequence type=transcript   gene model=Glyma08g19460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGGGAAGACGGTGTTGGCACGTGTCAAGCAAGAGCTAGAATCGTGTGTCTTTTTAACAGTAGTAGTAGTTGTATTAGGTACACAGAGGGTGACGTGGGAAAGAAACAAATGCTGCCTCTTTCATCTTTGGAACCTGGATTGCGCATAAATACCCTCTTCTCCCTTCATCTACTCCCTCACCAACACTCCTCGTTTCTCTAATTCTCCATTATTACATTTTACTATAAAATTACAGTACTAACTTAGCTAGCAAGCAGGCCAGTACCAGTTTTATTAATTTCCACCATATTGTAACGCTGCCATTGGTGGTTGGCCGTGGTAACGTACAGTGGTCATAGTTTAACAAATTAATAGTAATTAGAAAGATGAAGGATGTGTGCAATGTGGTGCAGGGATTGAAGCCTGTGCTGCTAATGGTAGTGGTGCAAATAGCATTTGCTGGGGTCAATGTCTTCTACAAGTTCGCGGTAAACGATGGCATGAGCTTGAGGGTCGTTGTTGCTTACCGCTTTGTATTCGCCACAGTTTTCATTGCTCCACTTGCTCTCATCGTTGAAAGGAAGAAGAGGACAAAGATGACTTGGACGGTACTGTTTCAGTCATTTCTTTGCGGCTTATTTGGGGGATCATTAGCTCAAAATTTCTACTTACAAGCCCTGGCTTTAACTTCTGCAACGTTTGCATCCGCAATGTCGAACCTTATACCAGGCATAACCTTTATCTTGGCCGTTTGCTTCGGTATGGAAAGATTAAATTTGAGAACAGCAGCAGGAAAGGCCAAAATAGTGGGTACATTAATTGGAATTGGTGGGGCAATGGTACTTACTTTCGTTAAAGGTGTGCATATCGAATTCGGGTCCTTTCATTTGAACCTTTTGCATCCCCAAAACGGTACGCACGCACATTCAGCTACCGGTGCTCATACCCTCTTGGGTTCTCTGTGCGCCCTGGCTAGTGGCATCAGCTATGCATTGTGGCTCATCATTCAGGCCAAGATGAGTGAAAGTTACCCTAGACCTTACTCAAGCACGGCGTTGATGTCACTTTGGGGGTCACTGCTGTCCATTGTGTTAGCACTTTGCGTTGAGAGGGACTGGAGTCAGTGGAGGTTGGGTTGGAATATTAGGCTTTTGACTGCAGCATATACGCCCCCTGATGCTCGTGACGGTGGCCTTGGCTGGTTCTACGATTTTGAACGAGAAGCTACACCTTGGTTGCGTAATTGGAGCAGTGCTGATTGTGTGTGGTTTATATGTGGTATTATGGGGTAAAAGTAAAGAGATGAAGAAGAAGAATCAATTAGTGCCAGCACAAAGCCCCCATGACAATGAATCTAATACGGTCGTCGAAATTGTGGTGAGGTCTGCACAAGAAGATAAAAGCAACCAAAACAAAACCCATGAAATTGTTGCAAAAGTAGTTAGGGATAATGACGATTCATGAGCAGATGGTCACGAAGGGCATTGTTCAAATGAACACAATCAGGGAAACAACGGAGAACAAGAAAATTATAATATTAATGCTTCACATAAGTTTTTAACATATGATATTAAATTCTACGACTAGATAGATTAGATCCAACAAAGGAAATCTTGCCATCCTTTTCAAATCGAACCAATGTGCTAAGCATTTTTGGTAGTGTTGGAAAATGGAAAGCACTTTCTAATTAGTAAGTTAAAATATCTTTATAGATTCTTATATATTCACACTTTGGCTTTTCGTAAATGATTCATTACTAATCTGACAATTAATTTAAAATTTGTGTTTGTTGATATCATTACTAATATGACAATTAAATACAATTACGATTAG

>Glyma08g19460.4   sequence type=transcript   gene model=Glyma08g19460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGGGAAGACGGTGTTGGCACGTGTCAAGCAAGAGCTAGAATCGTGTGTCTTTTTAACAGTAGTAGTAGTTGTATTAGGTACACAGAGGGTGACGTGGGAAAGAAACAAATGCTGCCTCTTTCATCTTTGGAACCTGGATTGCGCATAAATACCCTCTTCTCCCTTCATCTACTCCCTCACCAACACTCCTCGTTTCTCTAATTCTCCATTATTACATTTTACTATAAAATTACAGTACTAACTTAGCTAGCAAGCAGGCCAGTACCAGTTTTATTAATTTCCACCATATTGTAACGCTGCCATTGGTGGTTGGCCGTGGTAACGTACAGTGGTCATAGTTTAACAAATTAATAGTAATTAGAAAGATGAAGGATGTGTGCAATGTGGTGCAGGGATTGAAGCCTGTGCTGCTAATGGTAGTGGTGCAAATAGCATTTGCTGGGGTCAATGTCTTCTACAAGTTCGCGGTAAACGATGGCATGAGCTTGAGGGTCGTTGTTGCTTACCGCTTTGTATTCGCCACAGTTTTCATTGCTCCACTTGCTCTCATCGTTGAAAGGAAGAAGAGGACAAAGATGACTTGGACGGTACTGTTTCAGTCATTTCTTTGCGGCTTATTTGGGGGATCATTAGCTCAAAATTTCTACTTACAAGCCCTGGCTTTAACTTCTGCAACGTTTGCATCCGCAATGTCGAACCTTATACCAGGCATAACCTTTATCTTGGCCGTTTGCTTCGGTATGGAAAGATTAAATTTGAGAACAGCAGCAGGAAAGGCCAAAATAGTGGGTACATTAATTGGAATTGGTGGGGCAATGGTACTTACTTTCGTTAAAGGTGTGCATATCGAATTCGGGTCCTTTCATTTGAACCTTTTGCATCCCCAAAACGGTACGCACGCACATTCAGCTACCGGTGCTCATACCCTCTTGGGTTCTCTGTGCGCCCTGGCTAGTGGCATCAGCTATGCATTGTGGCTCATCATTCAGGCCAAGATGAGTGAAAGTTACCCTAGACCTTACTCAAGCACGGCGTTGATGTCACTTTGGGGGTCACTGCTGTCCATTGTGTTAGCACTTTGCGTTGAGAGGGACTGGAGTCAGTGGAGGTTGGGTTGGAATATTAGGCTTTTGACTGCAGCATATACGGGTATTGTGGTTTCTGGGGTGATGGTGGTTGTGATTTCATGGTGTGTCCACATGAGAGGCCCATTGTTTGCCTCTGTTTTCAGCCCCCTGATGCTCGTGACGGTGGCCTTGGCTGGTTCTACGATTTTGAACGAGAAGCTACACCTTGGTTGCGTAATTGGAGCAGTGCTGATTGTGTGTGGTTTATATGTGGTATTATGGGGTAAAAGTAAAGAGATGAAGAAGAAGAATCAATTAGTGCCAGCACAAAGCCCCCATGACAATGAATCTAATACGGTCGTCGAAATTGTGGTGAGGTCTGCACAAGAAGATAAAAGCAACCAAAACAAAACCCATGAAATTGTTGCAAAAGTAGTTAGGGATAATGACGATTCATGAGCAGATGGTCACGAAGGGCATTGTTCAAATGAACACAATCAGGGAAACAACGGAGAACAAGAAAATTATAATATTAATGCTTCACATAAGTTTTTAACATATGATATTAAATTCTACGACTAGATAGATTAGATCCAACAAAGGAAATCTTGCCATCCTTTTCAAATCGAACCAATGTGCTAAGCATTTTTGGTAGTGTTGGAAAATGGAAAGCACTTTCTAATTAGTAAGTTAAAATATCTTTATAGATTCTTATATATTCACACTTTGGCTTTTCGTAAATGATTCATTACTAATCTGACAATTAATTTAAAATTTGTGTTTGTTGATATCATTACTAATATGACAATTAAATACAATTACGATTAG

Coding sequences of Glyma08g19460

Limit To All Plant Sequences

>Glyma08g19460.1   sequence type=CDS   gene model=Glyma08g19460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTAGTGGTGCAAATAGCATTTGCTGGGGTCAATGTCTTCTACAAGTTCGCGGTAAACGATGGCATGAGCTTGAGGGTCGTTGTTGCTTACCGCTTTGTATTCGCCACAGTTTTCATTGCTCCACTTGCTCTCATCGTTGAAAGGAAGAAGAGGACAAAGATGACTTGGACGGTACTGTTTCAGTCATTTCTTTGCGGCTTATTTGGGGGATCATTAGCTCAAAATTTCTACTTACAAGCCCTGGCTTTAACTTCTGCAACGTTTGCATCCGCAATGTCGAACCTTATACCAGGCATAACCTTTATCTTGGCCGTTTGCTTCGGTATGGAAAGATTAAATTTGAGAACAGCAGCAGGAAAGGCCAAAATAGTGGGTACATTAATTGGAATTGGTGGGGCAATGGTACTTACTTTCGTTAAAGGTGTGCATATCGAATTCGGGTCCTTTCATTTGAACCTTTTGCATCCCCAAAACGGTACGCACGCACATTCAGCTACCGGTGCTCATACCCTCTTGGGTTCTCTGTGCGCCCTGGCTAGTGGCATCAGCTATGCATTGTGGCTCATCATTCAGGCCAAGATGAGTGAAAGTTACCCTAGACCTTACTCAAGCACGGCGTTGATGTCACTTTGGGGGTCACTGCTGTCCATTGTGTTAGCACTTTGCGTTGAGAGGGACTGGAGTCAGTGGAGGTTGGGTTGGAATATTAGGCTTTTGACTGCAGCATATACGGGTATTGTGGTTTCTGGGGTGATGGTGGTTGTGATTTCATGGTGTGTCCACATGAGAGGCCCATTGTTTGCCTCTGTTTTCAGCCCCCTGATGCTCGTGACGGTGGCCTTGGCTGGTTCTACGATTTTGAACGAGAAGCTACACCTTGGTTGCGTAATTGGAGCAGTGCTGATTGTGTGTGGTTTATATGTGGTATTATGGGGTAAAAGTAAAGAGATGAAGAAGAAGAATCAATTAGTGCCAGCACAAAGCCCCCATGACAATGAATCTAATACGGTCGTCGAAATTGTGGTGAGGTCTGCACAAGAAGATAAAAGCAACCAAAACAAAACCCATGAAATTGTTGCAAAAGTAGTTAGGGATAATGACGATTCATGA

>Glyma08g19460.3   sequence type=CDS   gene model=Glyma08g19460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGGATGTGTGCAATGTGGTGCAGGGATTGAAGCCTGTGCTGCTAATGGTAGTGGTGCAAATAGCATTTGCTGGGGTCAATGTCTTCTACAAGTTCGCGGTAAACGATGGCATGAGCTTGAGGGTCGTTGTTGCTTACCGCTTTGTATTCGCCACAGTTTTCATTGCTCCACTTGCTCTCATCGTTGAAAGGAAGAAGAGGACAAAGATGACTTGGACGGTACTGTTTCAGTCATTTCTTTGCGGCTTATTTGGGGGATCATTAGCTCAAAATTTCTACTTACAAGCCCTGGCTTTAACTTCTGCAACGTTTGCATCCGCAATGTCGAACCTTATACCAGGCATAACCTTTATCTTGGCCGTTTGCTTCGGTATGGAAAGATTAAATTTGAGAACAGCAGCAGGAAAGGCCAAAATAGTGGGTACATTAATTGGAATTGGTGGGGCAATGGTACTTACTTTCGTTAAAGGTGTGCATATCGAATTCGGGTCCTTTCATTTGAACCTTTTGCATCCCCAAAACGGTACGCACGCACATTCAGCTACCGGTGCTCATACCCTCTTGGGTTCTCTGTGCGCCCTGGCTAGTGGCATCAGCTATGCATTGTGGCTCATCATTCAGGCCAAGATGAGTGAAAGTTACCCTAGACCTTACTCAAGCACGGCGTTGATGTCACTTTGGGGGTCACTGCTGTCCATTGTGTTAGCACTTTGCGTTGAGAGGGACTGGAGTCAGTGGAGGTTGGGTTGGAATATTAGGCTTTTGACTGCAGCATATACGCCCCCTGATGCTCGTGACGGTGGCCTTGGCTGGTTCTACGATTTTGAACGAGAAGCTACACCTTGGTTGCGTAATTGGAGCAGTGCTGATTGTGTGTGGTTTATATGTGGTATTATGGGGTAA

>Glyma08g19460.4   sequence type=CDS   gene model=Glyma08g19460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGGATGTGTGCAATGTGGTGCAGGGATTGAAGCCTGTGCTGCTAATGGTAGTGGTGCAAATAGCATTTGCTGGGGTCAATGTCTTCTACAAGTTCGCGGTAAACGATGGCATGAGCTTGAGGGTCGTTGTTGCTTACCGCTTTGTATTCGCCACAGTTTTCATTGCTCCACTTGCTCTCATCGTTGAAAGGAAGAAGAGGACAAAGATGACTTGGACGGTACTGTTTCAGTCATTTCTTTGCGGCTTATTTGGGGGATCATTAGCTCAAAATTTCTACTTACAAGCCCTGGCTTTAACTTCTGCAACGTTTGCATCCGCAATGTCGAACCTTATACCAGGCATAACCTTTATCTTGGCCGTTTGCTTCGGTATGGAAAGATTAAATTTGAGAACAGCAGCAGGAAAGGCCAAAATAGTGGGTACATTAATTGGAATTGGTGGGGCAATGGTACTTACTTTCGTTAAAGGTGTGCATATCGAATTCGGGTCCTTTCATTTGAACCTTTTGCATCCCCAAAACGGTACGCACGCACATTCAGCTACCGGTGCTCATACCCTCTTGGGTTCTCTGTGCGCCCTGGCTAGTGGCATCAGCTATGCATTGTGGCTCATCATTCAGGCCAAGATGAGTGAAAGTTACCCTAGACCTTACTCAAGCACGGCGTTGATGTCACTTTGGGGGTCACTGCTGTCCATTGTGTTAGCACTTTGCGTTGAGAGGGACTGGAGTCAGTGGAGGTTGGGTTGGAATATTAGGCTTTTGACTGCAGCATATACGGGTATTGTGGTTTCTGGGGTGATGGTGGTTGTGATTTCATGGTGTGTCCACATGAGAGGCCCATTGTTTGCCTCTGTTTTCAGCCCCCTGATGCTCGTGACGGTGGCCTTGGCTGGTTCTACGATTTTGAACGAGAAGCTACACCTTGGTTGCGTAATTGGAGCAGTGCTGATTGTGTGTGGTTTATATGTGGTATTATGGGGTAAAAGTAAAGAGATGAAGAAGAAGAATCAATTAGTGCCAGCACAAAGCCCCCATGACAATGAATCTAATACGGTCGTCGAAATTGTGGTGAGGTCTGCACAAGAAGATAAAAGCAACCAAAACAAAACCCATGAAATTGTTGCAAAAGTAGTTAGGGATAATGACGATTCATGA

Predicted protein sequences of Glyma08g19460

Limit To All Plant Sequences

>Glyma08g19460.1   sequence type=predicted peptide   gene model=Glyma08g19460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVVVQIAFAGVNVFYKFAVNDGMSLRVVVAYRFVFATVFIAPLALIVERKKRTKMTWTVLFQSFLCGLFGGSLAQNFYLQALALTSATFASAMSNLIPGITFILAVCFGMERLNLRTAAGKAKIVGTLIGIGGAMVLTFVKGVHIEFGSFHLNLLHPQNGTHAHSATGAHTLLGSLCALASGISYALWLIIQAKMSESYPRPYSSTALMSLWGSLLSIVLALCVERDWSQWRLGWNIRLLTAAYTGIVVSGVMVVVISWCVHMRGPLFASVFSPLMLVTVALAGSTILNEKLHLGCVIGAVLIVCGLYVVLWGKSKEMKKKNQLVPAQSPHDNESNTVVEIVVRSAQEDKSNQNKTHEIVAKVVRDNDDS*

>Glyma08g19460.3   sequence type=predicted peptide   gene model=Glyma08g19460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKDVCNVVQGLKPVLLMVVVQIAFAGVNVFYKFAVNDGMSLRVVVAYRFVFATVFIAPLALIVERKKRTKMTWTVLFQSFLCGLFGGSLAQNFYLQALALTSATFASAMSNLIPGITFILAVCFGMERLNLRTAAGKAKIVGTLIGIGGAMVLTFVKGVHIEFGSFHLNLLHPQNGTHAHSATGAHTLLGSLCALASGISYALWLIIQAKMSESYPRPYSSTALMSLWGSLLSIVLALCVERDWSQWRLGWNIRLLTAAYTPPDARDGGLGWFYDFEREATPWLRNWSSADCVWFICGIMG*

>Glyma08g19460.4   sequence type=predicted peptide   gene model=Glyma08g19460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKDVCNVVQGLKPVLLMVVVQIAFAGVNVFYKFAVNDGMSLRVVVAYRFVFATVFIAPLALIVERKKRTKMTWTVLFQSFLCGLFGGSLAQNFYLQALALTSATFASAMSNLIPGITFILAVCFGMERLNLRTAAGKAKIVGTLIGIGGAMVLTFVKGVHIEFGSFHLNLLHPQNGTHAHSATGAHTLLGSLCALASGISYALWLIIQAKMSESYPRPYSSTALMSLWGSLLSIVLALCVERDWSQWRLGWNIRLLTAAYTGIVVSGVMVVVISWCVHMRGPLFASVFSPLMLVTVALAGSTILNEKLHLGCVIGAVLIVCGLYVVLWGKSKEMKKKNQLVPAQSPHDNESNTVVEIVVRSAQEDKSNQNKTHEIVAKVVRDNDDS*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain