Report for Sequence Feature Glyma08g19390
Feature Type: gene_model
Chromosome: Gm08
Start: 14669214
stop: 14670284
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g19390
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G43660 AT
Annotation by Michelle Graham. TAIR10: Vacuolar iron transporter (VIT) family protein | chr3:15565332-15565928 FORWARD LENGTH=198
SoyBase E_val: 1.00E-95 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005575 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cellular component
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
KOG4473
KOG
Uncharacterized membrane protein
JGI ISS
PF01988 PFAM
VIT family
JGI ISS
UniRef100_I1KUG4 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KUG4_SOYBN
SoyBase E_val: 3.00E-154 ISS
UniRef100_Q9M2C0 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Vacuolar iron transporter homolog 4 n=1 Tax=Arabidopsis thaliana RepID=VITH4_ARATH
SoyBase E_val: 6.00E-93 ISS
Expression Patterns of Glyma08g19390
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma08g19390
Paralog Evidence Comments
Glyma15g05610 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g19390 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g181900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g19390
Coding sequences of Glyma08g19390
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g19390.1 sequence type=CDS gene model=Glyma08g19390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCAAACAACAATATTCAACCATGCCATGACGACCTTGATCCTAGAGAAGCCAACAACCCTTCAAAGATGTTAAACTTGGACGTGGAAGGACAGAGAGAGGGTTTTGACTATGCAAAGAGGGCACAGTGGCTTAGAGCTGCTGTTTTGGGTGCCAATGATGGTTTGCTCTCAACAGCATCCCTCATGATGGGAGTTGGAGCTGTGAGGAAAGATGTTAAGAGTATGATGCTGACTGGGGTTGCAGGGCTGGTGGCTGGAGCATGCAGCATGGCCATTGGAGAGTTTGTTTCTGTATACTCACAGTATGATATTGAGTTGGCTCAGATGAAAAGAGAGGGAAACATGGATGAGAAGAAGGATAAGTTGCCGAACCCCTATTATGCTGCTTTTGCCTCTGCCCTTGCGTTTGCTATTGGGGCAGGGGTGCCACTACTTGGTGCTGCCTTTGTCAATAGCTATAAGGCAAGGTTAGGGGTGGTGGCGGCTGTTGTCACCCTTGCTTTGATCGTCTTTGGAGATTTGGGGGCCTTTTTAGGGAAAGCACCCAGGGTTAAGTCCACTCTCAGGGTTTTGATTGGGGGGTGGTTGGCCATGGCTATTACTTTTGGTTTAACAAAGCTTGTAGATCATCTTGGACTTGGAGTAGCTTGA
Predicted protein sequences of Glyma08g19390
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g19390.1 sequence type=predicted peptide gene model=Glyma08g19390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MANNNIQPCHDDLDPREANNPSKMLNLDVEGQREGFDYAKRAQWLRAAVLGANDGLLSTASLMMGVGAVRKDVKSMMLTGVAGLVAGACSMAIGEFVSVYSQYDIELAQMKREGNMDEKKDKLPNPYYAAFASALAFAIGAGVPLLGAAFVNSYKARLGVVAAVVTLALIVFGDLGAFLGKAPRVKSTLRVLIGGWLAMAITFGLTKLVDHLGLGVA*