Glyma08g19340 - SoyBase

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Report for Sequence Feature Glyma08g19340

Feature Type:	gene_model
Chromosome:	Gm08
Start:	14636440
stop:	14640012
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g19340

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G25980	AT	Annotation by Michelle Graham. TAIR10: Peroxidase superfamily protein \| chr4:13189393-13191507 FORWARD LENGTH=371	SoyBase	E_val: 1.00E-159	ISS
GO:0006979	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to oxidative stress	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0004601	GO-mf	Annotation by Michelle Graham. GO Molecular Function: peroxidase activity	SoyBase	N/A	ISS
GO:0020037	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heme binding	SoyBase	N/A	ISS
PF00141	PFAM	Peroxidase	JGI		ISS
UniRef100_G7IL97	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Peroxidase n=2 Tax=Medicago truncatula RepID=G7IL97_MEDTR	SoyBase	E_val: 2.00E-165	ISS
UniRef100_I1KUG0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KUG0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g19340

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g19340

Paralog	Evidence	Comments
Glyma15g05650	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g19340 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g181500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g19340

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g19340

Limit To All Plant Sequences

>Glyma08g19340.1   sequence type=CDS   gene model=Glyma08g19340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGCTCTTTGTTTTGTCTCTCTTATTCTTCTCATTCTTAATGGGGATGAGTTCCGAGGGTCAGCTTGAAGTAGGTTTCTACTCCAACACATGTCCTCAAGTAGACTCAATTGTCGGTGCCGTTGTTAGAGACGCTGTTCTCTCTGACCCCAACATGGCTGCTGTCTTACTCAGACTTCATTTTCACGATTGCTTTGTTCAGGGATGTGATGGTTCAATTCTGATTGAGAATGGTCCACAATCGGAGAGACATGCATTTGGACATCAAGGGGTTAGAGGGTTTGAAGTGATAGAAAGAGCCAAGACAAAATTGGAAGGCTCTTGCCCCGGCTTGGTTTCTTGTGCAGACATAGTGGCTTTGGCAGCCAGAGACGCTGTAGTCATGGCAAATGGGCCGGCATATCAAGTTCCAACAGGGAGGAGAGATGGGTTGGTTTCCAATCTTTCGCTTGCAGATGACATGCCAGATGTTAGTGATTCAATTGAGCTACTCAAGACCAAGTTTCTCAACAAGGGTCTCTCCGTGAAAGACCTTGTTCTTCTTAGTGGTGCGCATACAATTGGAACCACAGCGTGTTTCTTTATGACCAGAAGACTGTACAACTTTTTCCCAAGTGGTGAGGGGTCAGACCCAGCAATTAGCCAAAACTTCCTCCCTCAGCTAAAGGCAAGGTGCCCTAAGAATGGAGATGTTAATGTTCGTCTAGCTATTGATGCATGGAGTGAGCAGAAGTTTGACATAAACATTTTGAAGAACATAAGGGAAGGTTTTGCTGTGCTAGAATCTGATGCCAGACTCAATGATGACATAGCCACCAAGAATATCATTGACTCCTATTTTTCTCCCTTCAGTCCAATGTTTGGACCTTCTTTTGAAGCTGATTTTGTTGAGTCAATTGTGAAAATGGGCCAAATTGGTGTCAAGACAGGTTTCCTTGGAGAGGTTAGGCGCGTGTGTTCAGCTTTTAATTGA

Predicted protein sequences of Glyma08g19340

Limit To All Plant Sequences

>Glyma08g19340.1   sequence type=predicted peptide   gene model=Glyma08g19340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALFVLSLLFFSFLMGMSSEGQLEVGFYSNTCPQVDSIVGAVVRDAVLSDPNMAAVLLRLHFHDCFVQGCDGSILIENGPQSERHAFGHQGVRGFEVIERAKTKLEGSCPGLVSCADIVALAARDAVVMANGPAYQVPTGRRDGLVSNLSLADDMPDVSDSIELLKTKFLNKGLSVKDLVLLSGAHTIGTTACFFMTRRLYNFFPSGEGSDPAISQNFLPQLKARCPKNGDVNVRLAIDAWSEQKFDINILKNIREGFAVLESDARLNDDIATKNIIDSYFSPFSPMFGPSFEADFVESIVKMGQIGVKTGFLGEVRRVCSAFN*

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