Glyma08g19290 - SoyBase

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Report for Sequence Feature Glyma08g19290

Feature Type:	gene_model
Chromosome:	Gm08
Start:	14593173
stop:	14594975
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g19290

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G22590	AT	Annotation by Michelle Graham. TAIR10: UDP-Glycosyltransferase superfamily protein \| chr2:9593012-9594424 FORWARD LENGTH=470	SoyBase	E_val: 2.00E-121	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
GO:0016758	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring hexosyl groups	SoyBase	N/A	ISS
KOG1192	KOG	UDP-glucuronosyl and UDP-glucosyl transferase	JGI		ISS
PTHR11926	Panther	GLUCOSYL/GLUCURONOSYL TRANSFERASES	JGI		ISS
PTHR11926:SF15	Panther	UDP-GLUCURONOSYLTRANSFERASE RELATED	JGI		ISS
PF00201	PFAM	UDP-glucoronosyl and UDP-glucosyl transferase	JGI		ISS
UniRef100_D4Q9Z5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Soyasaponin III rhamnosyltransferase n=1 Tax=Glycine max RepID=SGT3_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_D4Q9Z5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Soyasaponin III rhamnosyltransferase n=1 Tax=Glycine max RepID=SGT3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g19290

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g19290

Paralog	Evidence	Comments
Glyma15g05710	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g19290 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g181000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g19290

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g19290

Limit To All Plant Sequences

>Glyma08g19290.1   sequence type=CDS   gene model=Glyma08g19290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTCAGTTGCATTAAATGGCAAAAGCAATGATAAGCCTCTTCACGTTGCCATGCTCCCATGGCTGGCCATGGGTCACATATACCCTTACTTCGAAGTCGCCAAGATTCTTGCTCAAAAGGGTCACTTTGTTACCTTCATAAACAGCCCCAAAAACATTGACCGCATGCCCAAAACCCCGAAACACTTAGAACCATTCATCAAACTCGTGAAGCTACCCTTGCCAAAAATAGAGCATCTCCCAGAAGGCGCAGAGAGCACAATGGACATTCCGTCCAAAAAAAACTGTTTCCTCAAGAAAGCTTACGAGGGCCTACAATACGCCGTTTCCAAGTTGCTGAAAACGTCAAACCCTGACTGGGTTTTGTATGACTTCGCAGCTGCTTGGGTCATACCAATAGCCAAGAGCTACAACATTCCTTGTGCTCACTACAACATTACCCCAGCTTTCAACAAAGTCTTTTTCGATCCACCAAAGGACAAAATGAAGGATTACTCGCTCGCAAGCATATGTGGTCCTCCCACGTGGCTTCCTTTCACCACAACGATCCATATCAGGCCTTACGAGTTTTTGAGAGCATACGAAGGTACCAAAGACGAGGAGACAGGTGAAAGGGCTTCTTTTGATCTCAACAAGGCATATTCAAGCTGTGACCTTTTTCTTCTAAGAACCTCCAGAGAGCTTGAAGGAGACTGGTTGGATTATCTTGCTGGTAATTACAAGGTTCCTGTGGTTCCAGTTGGGTTGCTTCCACCATCCATGCAGATAAGGGACGTTGAAGAGGAAGACAATAACCCTGATTGGGTCAGAATCAAGGATTGGTTAGACACACAAGAGTCGTCATCCGTGGTTTATATTGGGTTTGGGAGCGAGTTGAAGCTGAGTCAGGAGGACCTCACTGAGTTGGCACATGGCATTGAGCTTTCAAATTTGCCTTTCTTTTGGGCATTGAAGAACCTGAAAGAAGGTGTGCTTGAGTTGCCAGAAGGGTTTGAAGAAAGAACCAAGGAACGTGGCATTGTTTGGAAGACTTGGGCACCCCAGCTTAAGATCTTGGCTCATGGAGCAATTGGAGGGTGCATGAGTCACTGTGGCTCTGGCTCTGTGATTGAGAAGGTTCATTTTGGGCACGTGCTTGTGACTCTGCCTTATTTGCTTGACCAATGTCTGTTTTCGAGGGTGCTGGAGGAAAAGCAAGTGGCTGTTGAGGTTCCAAGGAGCGAGAAAGATGGGTCTTTTACTAGGGTCGATGTGGCTAAGACATTGAGATTTGCGATTGTGGATGAGGAAGGGAGTGCTCTAAGAGAGAATGCCAAGGAGATGGGCAAGGTTTTCAGTTCCGAAGAACTTCATAATAAGTATATTCAAGATTTCATTGATGCGCTTCAGAAGTATAGGATTCCTTCCGCTAGCTAA

Predicted protein sequences of Glyma08g19290

Limit To All Plant Sequences

>Glyma08g19290.1   sequence type=predicted peptide   gene model=Glyma08g19290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSVALNGKSNDKPLHVAMLPWLAMGHIYPYFEVAKILAQKGHFVTFINSPKNIDRMPKTPKHLEPFIKLVKLPLPKIEHLPEGAESTMDIPSKKNCFLKKAYEGLQYAVSKLLKTSNPDWVLYDFAAAWVIPIAKSYNIPCAHYNITPAFNKVFFDPPKDKMKDYSLASICGPPTWLPFTTTIHIRPYEFLRAYEGTKDEETGERASFDLNKAYSSCDLFLLRTSRELEGDWLDYLAGNYKVPVVPVGLLPPSMQIRDVEEEDNNPDWVRIKDWLDTQESSSVVYIGFGSELKLSQEDLTELAHGIELSNLPFFWALKNLKEGVLELPEGFEERTKERGIVWKTWAPQLKILAHGAIGGCMSHCGSGSVIEKVHFGHVLVTLPYLLDQCLFSRVLEEKQVAVEVPRSEKDGSFTRVDVAKTLRFAIVDEEGSALRENAKEMGKVFSSEELHNKYIQDFIDALQKYRIPSAS*

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