Glyma08g19280 - SoyBase

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Report for Sequence Feature Glyma08g19280

Feature Type:	gene_model
Chromosome:	Gm08
Start:	14586146
stop:	14590755
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g19280

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G64570	AT	Annotation by Michelle Graham. TAIR10: beta-D-xylosidase 4 \| chr5:25810227-25813309 REVERSE LENGTH=784	SoyBase	E_val: 0	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0045493	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylan catabolic process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0048046	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: apoplast	SoyBase	N/A	ISS
GO:0004553	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds	SoyBase	N/A	ISS
GO:0009044	GO-mf	Annotation by Michelle Graham. GO Molecular Function: xylan 1,4-beta-xylosidase activity	SoyBase	N/A	ISS
PF00933	PFAM	Glycosyl hydrolase family 3 N terminal domain	JGI		ISS
PF01915	PFAM	Glycosyl hydrolase family 3 C terminal domain	JGI		ISS
UniRef100_G7ILA8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Beta-xylosidase/alpha-L-arabinofuranosidase n=1 Tax=Medicago truncatula RepID=G7ILA8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KUF1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KUF1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g19280

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g19280

Paralog	Evidence	Comments
Glyma15g05720	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g19280 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g180900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g19280

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g19280

Limit To All Plant Sequences

>Glyma08g19280.1   sequence type=CDS   gene model=Glyma08g19280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTGCACCGAAAACAGACAACCGAAGGTTCCTGTTTTCCTCTGTTTCTTCTCATTTATGTTTGTTGCCACCGTTTTGTTGAATTGCGACCGGGTTTCGGGGCAGACATCCTCTGTTTTTGCCTGCGATGTTGCGAAGAACCCGGCTTTGGCAGGTTATGGATTCTGTGACAAGTCACTCTCGCTGGAGGACAGGGTCGCTGACCTGGTGAAGAGGCTCACATTGCAAGAGAAAATCGGAAGCTTGGTGAATTCCGCGACCAGTGTGAGTAGACTCGGCATTCCCAAGTACGAATGGTGGTCTGAGGCACTTCATGGAGTCTCCAACGTTGGACCTGGGACCCACTTCTCAAGTCTGGTTCCTGGAGCCACTAGTTTTCCTATGCCCATTCTCACTGCGGCATCATTCAACGCTTCTCTCTTTGAGGCCATTGGAAGGGTGGTTTCAACAGAAGCCCGAGCAATGTACAATGTGGGGTTGGCTGGTTTGACATATTGGTCACCAAACATAAACATATTCAGAGATCCCAGATGGGGAAGAGGACAAGAGACACCAGGGGAAGACCCTTTGCTAAGTAGCAAATACGCAACGGGATACGTGAAAGGTCTTCAACAAACTGATGATGGAGACTCCAACAAGCTCAAGGTTGCTGCTTGTTGCAAACACTATACAGCCTATGATTTGGATAACTGGAAAGGCATTCAGCGTTACACCTTCAATGCTGTGGTGACACAACAAGATATGGATGATACATTCCAACCACCGTTTAAGAGCTGCGTGATTGACGGGAATGTTGCCAGTGTCATGTGTTCCTACAACCAGGTTAATGGTAAACCAACCTGCGCAGATCCTGACCTCCTTAAGGGGGTTATCCGAGGCGAATGGAAATTAAATGGATATATAGTTTCTGACTGTGACTCAGTAGAAGTGCTTTTCAAAGATCAGCACTACACCAAGACTCCTGAAGAAGCTGCAGCCGAAACCATTCTGGCAGGGTTGGATTTGAACTGTGGAAATTATCTTGGCCAATACACAGAAGGGGCAGTGAAGCAAGGGCTATTGGATGAAGCATCCATTAACAATGCTGTCTCAAACAATTTTGCCACATTGATGCGTCTTGGTTTCTTTGATGGCGATCCAAGCAAGCAAACTTATGGTAACCTTGGTCCAAATGATGTATGCACTTCAGAGAACCGGGAGCTCGCCCGTGAAGCAGCAAGACAAGGGATTGTGTTGCTTAAAAATAGTCTGGGATCATTGCCTCTCAATGCCAAAGCCATTAAATCATTGGCAGTTATAGGGCCCAATGCTAATGCTACCAGGGTCATGATTGGAAACTACGAAGGCATTCCTTGCAACTATATATCACCCTTGCAAGCACTAACAGCCTTAGTTCCTACGAGCTATGCTGCCGGCTGCCCCAATGTGCAATGTGCGAATGCAGAGTTAGATGATGCCACACAGATAGCAGCATCTGCAGATGCAACAGTGATTGTAGTTGGTGCAAGTCTAGCTATAGAGGCAGAAAGTCTTGACAGAATTAACATTCTTCTTCCAGGACAACAGCAACTTCTAGTGAGTGAAGTTGCTAATGCATCCAAGGGACCTGTGATTCTTGTCATAATGTCTGGTGGGGGCATGGATGTGTCCTTTGCTAAATCTAATGATAAAATCACAAGCATCCTATGGGTTGGCTACCCTGGCGAAGCTGGTGGAGCTGCCATAGCTGATGTGATTTTTGGGTTTTATAATCCAAGTGGAAGGCTACCCATGACATGGTATCCACAATCATATGTAAACAAGGTGCCAATGACAAACATGAACATGAGGGCAGATCCTGCGACAGGTTACCCTGGTAGAACATACAGATTTTATAAAGGGGAAACTGTTTTCTCTTTTGGAGATGGAATAAGCTTCTCAAATATTGAGCACAAAATAGTTAAAGCACCTCAATTGGTGTCTGTTCCTCTAGCAGAAGATCATGAATGCCGTTCCTCAGAATGCATGTCACTTGATGTTGCTGATGAGCATTGCCAAAACTTGGCCTTCGATATTCACCTTGGGGTTAAGAACATGGGGAAAATGAGCAGTAGCCATGTAGTGTTATTGTTCTTTACTCCTCCTGACGTGCATAATGCTCCTCAGAAACACTTGTTGGGTTTTGAGAAAGTGCACTTGCCAGGAAAATCAGAAGCACAGGTTAGGTTCAAGGTAGATATTTGCAAGGATTTGAGTGTGGTTGATGAACTTGGCAATAGGAAAGTTCCACTGGGACAACATCTGCTTCATGTCGGAAACTTGAAGCATCAATTAAGTGTGAGTGTTTGA

Predicted protein sequences of Glyma08g19280

Limit To All Plant Sequences

>Glyma08g19280.1   sequence type=predicted peptide   gene model=Glyma08g19280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MACTENRQPKVPVFLCFFSFMFVATVLLNCDRVSGQTSSVFACDVAKNPALAGYGFCDKSLSLEDRVADLVKRLTLQEKIGSLVNSATSVSRLGIPKYEWWSEALHGVSNVGPGTHFSSLVPGATSFPMPILTAASFNASLFEAIGRVVSTEARAMYNVGLAGLTYWSPNINIFRDPRWGRGQETPGEDPLLSSKYATGYVKGLQQTDDGDSNKLKVAACCKHYTAYDLDNWKGIQRYTFNAVVTQQDMDDTFQPPFKSCVIDGNVASVMCSYNQVNGKPTCADPDLLKGVIRGEWKLNGYIVSDCDSVEVLFKDQHYTKTPEEAAAETILAGLDLNCGNYLGQYTEGAVKQGLLDEASINNAVSNNFATLMRLGFFDGDPSKQTYGNLGPNDVCTSENRELAREAARQGIVLLKNSLGSLPLNAKAIKSLAVIGPNANATRVMIGNYEGIPCNYISPLQALTALVPTSYAAGCPNVQCANAELDDATQIAASADATVIVVGASLAIEAESLDRINILLPGQQQLLVSEVANASKGPVILVIMSGGGMDVSFAKSNDKITSILWVGYPGEAGGAAIADVIFGFYNPSGRLPMTWYPQSYVNKVPMTNMNMRADPATGYPGRTYRFYKGETVFSFGDGISFSNIEHKIVKAPQLVSVPLAEDHECRSSECMSLDVADEHCQNLAFDIHLGVKNMGKMSSSHVVLLFFTPPDVHNAPQKHLLGFEKVHLPGKSEAQVRFKVDICKDLSVVDELGNRKVPLGQHLLHVGNLKHQLSVSV*

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