SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research




Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma08g19245): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma08g19245): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma08g19245

Feature Type:gene_model
Chromosome:Gm08
Start:14527585
stop:14529347
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G02600AT Annotation by Michelle Graham. TAIR10: Heavy metal transport/detoxification superfamily protein | chr5:585713-586855 REVERSE LENGTH=319 SoyBaseE_val: 6.00E-24ISS
GO:0009908GO-bp Annotation by Michelle Graham. GO Biological Process: flower development SoyBaseN/AISS
GO:0010015GO-bp Annotation by Michelle Graham. GO Biological Process: root morphogenesis SoyBaseN/AISS
GO:0010233GO-bp Annotation by Michelle Graham. GO Biological Process: phloem transport SoyBaseN/AISS
GO:0030001GO-bp Annotation by Michelle Graham. GO Biological Process: metal ion transport SoyBaseN/AISS
GO:0055078GO-bp Annotation by Michelle Graham. GO Biological Process: sodium ion homeostasis SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0046872GO-mf Annotation by Michelle Graham. GO Molecular Function: metal ion binding SoyBaseN/AISS
KOG1603 KOG Copper chaperone JGI ISS
PTHR22814Panther COPPER TRANSPORT PROTEIN ATOX1-RELATED JGI ISS
PTHR22814:SF50Panther SUBFAMILY NOT NAMED JGI ISS
PF00403PFAM Heavy-metal-associated domain JGI ISS
UniRef100_B9T733UniRef Annotation by Michelle Graham. Most informative UniRef hit: Chloroplast-targeted copper chaperone, putative n=1 Tax=Ricinus communis RepID=B9T733_RICCO SoyBaseE_val: 5.00E-22ISS
UniRef100_UPI000233B482UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233B482 related cluster n=1 Tax=unknown RepID=UPI000233B482 SoyBaseE_val: 2.00E-97ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g19245 not represented in the dataset

Glyma08g19245 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma15g05755 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g180500 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma08g19245.1   sequence type=CDS   gene model=Glyma08g19245   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGAATGGTTTCATGTGCCACTCTGAGGCATCAACAACAGTGTGCATGAGAAGCTGCGATACTATTACTGGGTCTGTGGTTGTGCCTAGGACTAGGAGTAGGAGGCATCAAAGAAGTGTTTCTCTTGATGATACAAGGTTGATCAAATATGCCAAGTACTCCAAACTTGTTGACTCTAGCACTAGCAGCAGGTTGTTCAATTCAGCTCACAAGAAAGGTGACTCTGTCTCTGTACCAAACATCAAGCATCAAGAGAATGAATCAAGGGAACTTCAGAAAAAGCCAACAGATTATGTCTTCCAGGTGGTTGTGATGCGGGTTGCTATTCATTGTCAAGGATGCGCGAGTAAAGTGAAAAGGCATCTGTCTAAGATGGAAGGAGTTACATCATTCAGTGTAGATGTAGAGTCCAAGAGGGTGACAGTAAAGGGACACATTTCTCCGGTGGGAGTCCTTGAGAGCATTTCAAAGGTGAAGAGGGCTGAGTTCTGGAATTGTTAA

>Glyma08g19245.1   sequence type=predicted peptide   gene model=Glyma08g19245   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRNGFMCHSEASTTVCMRSCDTITGSVVVPRTRSRRHQRSVSLDDTRLIKYAKYSKLVDSSTSSRLFNSAHKKGDSVSVPNIKHQENESRELQKKPTDYVFQVVVMRVAIHCQGCASKVKRHLSKMEGVTSFSVDVESKRVTVKGHISPVGVLESISKVKRAEFWNC*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo