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Report for Sequence Feature Glyma08g19201

Feature Type:gene_model
Chromosome:Gm08
Start:14484979
stop:14489046
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G22230AT Annotation by Michelle Graham. TAIR10: Thioesterase superfamily protein | chr2:9450042-9451427 FORWARD LENGTH=220 SoyBaseE_val: 2.00E-50ISS
GO:0000271GO-bp Annotation by Michelle Graham. GO Biological Process: polysaccharide biosynthetic process SoyBaseN/AISS
GO:0000272GO-bp Annotation by Michelle Graham. GO Biological Process: polysaccharide catabolic process SoyBaseN/AISS
GO:0005982GO-bp Annotation by Michelle Graham. GO Biological Process: starch metabolic process SoyBaseN/AISS
GO:0006633GO-bp Annotation by Michelle Graham. GO Biological Process: fatty acid biosynthetic process SoyBaseN/AISS
GO:0006744GO-bp Annotation by Michelle Graham. GO Biological Process: ubiquinone biosynthetic process SoyBaseN/AISS
GO:0009664GO-bp Annotation by Michelle Graham. GO Biological Process: plant-type cell wall organization SoyBaseN/AISS
GO:0009817GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to fungus, incompatible interaction SoyBaseN/AISS
GO:0009825GO-bp Annotation by Michelle Graham. GO Biological Process: multidimensional cell growth SoyBaseN/AISS
GO:0009832GO-bp Annotation by Michelle Graham. GO Biological Process: plant-type cell wall biogenesis SoyBaseN/AISS
GO:0009932GO-bp Annotation by Michelle Graham. GO Biological Process: cell tip growth SoyBaseN/AISS
GO:0010075GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth SoyBaseN/AISS
GO:0010817GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of hormone levels SoyBaseN/AISS
GO:0019344GO-bp Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process SoyBaseN/AISS
GO:0043481GO-bp Annotation by Michelle Graham. GO Biological Process: anthocyanin accumulation in tissues in response to UV light SoyBaseN/AISS
GO:0048653GO-bp Annotation by Michelle Graham. GO Biological Process: anther development SoyBaseN/AISS
GO:0048767GO-bp Annotation by Michelle Graham. GO Biological Process: root hair elongation SoyBaseN/AISS
GO:0071555GO-bp Annotation by Michelle Graham. GO Biological Process: cell wall organization SoyBaseN/AISS
GO:0005618GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cell wall SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009534GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid SoyBaseN/AISS
GO:0016836GO-mf Annotation by Michelle Graham. GO Molecular Function: hydro-lyase activity SoyBaseN/AISS
GO:0019171GO-mf Annotation by Michelle Graham. GO Molecular Function: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity SoyBaseN/AISS
GO:0047450GO-mf Annotation by Michelle Graham. GO Molecular Function: crotonoyl-[acyl-carrier-protein] hydratase activity SoyBaseN/AISS
PF07977PFAM FabA-like domain JGI ISS
UniRef100_C6TL39UniRef Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6TL39_SOYBN SoyBaseE_val: 2.00E-95ISS
UniRef100_E6Y9A5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Beta-hydroxyacyl-ACP dehydratase n=1 Tax=Arachis hypogaea RepID=E6Y9A5_ARAHY SoyBaseE_val: 2.00E-54ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g19201 not represented in the dataset

Glyma08g19201 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g179900 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma08g19201.1   sequence type=CDS   gene model=Glyma08g19201   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGCCTCAGCTCTCTCCAACAGATTGGTTTCACCCATTTCTCTTCCATCCAAACCCAAACCCAAAGCCATTTCCTTGCAACCCAAATTTTCACTTGTCAAATTCCCCAACACCAGATTCCATCCCTTGTCGAGGAAAACGACGTCGCTCACCACGTTTTGTTCCTCCGATGCTCCTCAGCATGACACCCCAATTGAATTAAGGTATCCAGCATTCCCAACCGTCATGGACATCAACCAGATTCGTGACATTTTGCCTCACAGGTTTCCTTTTCTTCTGGTGGATAGAGTGATTGAATACAATCCTGGAGTTTCTGCAGTGGCTATAAAGAATGTGACAATAAATGACAACTTCTTTCCTGGACATTTTCCAGAAAGGCCCATCATGCCTGGTGTTCTAATGGTTGAGGAACTATCTCAACCTGGAATGCATGAAAGTAGGGGCGGGATCTTGTATGATTTCTCTGTTGTAATAATCTGCTTTAAAAGCGGACATGAACAAGAGGTCTTTTGCTGCAGGCAATGGCACAAGTTGGTGGTTTGGTCATGTTGCAACCTGAAGTGGGAGGCTCTCGTGAAAACTTCTTCTTTGCTGGAATAG

>Glyma08g19201.1   sequence type=predicted peptide   gene model=Glyma08g19201   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAASALSNRLVSPISLPSKPKPKAISLQPKFSLVKFPNTRFHPLSRKTTSLTTFCSSDAPQHDTPIELRYPAFPTVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEELSQPGMHESRGGILYDFSVVIICFKSGHEQEVFCCRQWHKLVVWSCCNLKWEALVKTSSLLE*







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