|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT2G22230 | AT | Annotation by Michelle Graham. TAIR10: Thioesterase superfamily protein | chr2:9450042-9451427 FORWARD LENGTH=220 | SoyBase | E_val: 2.00E-50 | ISS |
GO:0000271 | GO-bp | Annotation by Michelle Graham. GO Biological Process: polysaccharide biosynthetic process | SoyBase | N/A | ISS |
GO:0000272 | GO-bp | Annotation by Michelle Graham. GO Biological Process: polysaccharide catabolic process | SoyBase | N/A | ISS |
GO:0005982 | GO-bp | Annotation by Michelle Graham. GO Biological Process: starch metabolic process | SoyBase | N/A | ISS |
GO:0006633 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid biosynthetic process | SoyBase | N/A | ISS |
GO:0006744 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ubiquinone biosynthetic process | SoyBase | N/A | ISS |
GO:0009664 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plant-type cell wall organization | SoyBase | N/A | ISS |
GO:0009817 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to fungus, incompatible interaction | SoyBase | N/A | ISS |
GO:0009825 | GO-bp | Annotation by Michelle Graham. GO Biological Process: multidimensional cell growth | SoyBase | N/A | ISS |
GO:0009832 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plant-type cell wall biogenesis | SoyBase | N/A | ISS |
GO:0009932 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell tip growth | SoyBase | N/A | ISS |
GO:0010075 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth | SoyBase | N/A | ISS |
GO:0010817 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of hormone levels | SoyBase | N/A | ISS |
GO:0019344 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process | SoyBase | N/A | ISS |
GO:0043481 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anthocyanin accumulation in tissues in response to UV light | SoyBase | N/A | ISS |
GO:0048653 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anther development | SoyBase | N/A | ISS |
GO:0048767 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root hair elongation | SoyBase | N/A | ISS |
GO:0071555 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall organization | SoyBase | N/A | ISS |
GO:0005618 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cell wall | SoyBase | N/A | ISS |
GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
GO:0009534 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid | SoyBase | N/A | ISS |
GO:0016836 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydro-lyase activity | SoyBase | N/A | ISS |
GO:0019171 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity | SoyBase | N/A | ISS |
GO:0047450 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: crotonoyl-[acyl-carrier-protein] hydratase activity | SoyBase | N/A | ISS |
PF07977 | PFAM | FabA-like domain | JGI | ISS | |
UniRef100_C6TL39 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6TL39_SOYBN | SoyBase | E_val: 2.00E-95 | ISS |
UniRef100_E6Y9A5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Beta-hydroxyacyl-ACP dehydratase n=1 Tax=Arachis hypogaea RepID=E6Y9A5_ARAHY | SoyBase | E_val: 2.00E-54 | ISS |
Glyma08g19201 not represented in the dataset |
Glyma08g19201 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma.08g179900 | Wm82.a2.v1 | IGC | As supplied by JGI |
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g19201.1 sequence type=CDS gene model=Glyma08g19201 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAGCCTCAGCTCTCTCCAACAGATTGGTTTCACCCATTTCTCTTCCATCCAAACCCAAACCCAAAGCCATTTCCTTGCAACCCAAATTTTCACTTGTCAAATTCCCCAACACCAGATTCCATCCCTTGTCGAGGAAAACGACGTCGCTCACCACGTTTTGTTCCTCCGATGCTCCTCAGCATGACACCCCAATTGAATTAAGGTATCCAGCATTCCCAACCGTCATGGACATCAACCAGATTCGTGACATTTTGCCTCACAGGTTTCCTTTTCTTCTGGTGGATAGAGTGATTGAATACAATCCTGGAGTTTCTGCAGTGGCTATAAAGAATGTGACAATAAATGACAACTTCTTTCCTGGACATTTTCCAGAAAGGCCCATCATGCCTGGTGTTCTAATGGTTGAGGAACTATCTCAACCTGGAATGCATGAAAGTAGGGGCGGGATCTTGTATGATTTCTCTGTTGTAATAATCTGCTTTAAAAGCGGACATGAACAAGAGGTCTTTTGCTGCAGGCAATGGCACAAGTTGGTGGTTTGGTCATGTTGCAACCTGAAGTGGGAGGCTCTCGTGAAAACTTCTTCTTTGCTGGAATAG
>Glyma08g19201.1 sequence type=predicted peptide gene model=Glyma08g19201 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAASALSNRLVSPISLPSKPKPKAISLQPKFSLVKFPNTRFHPLSRKTTSLTTFCSSDAPQHDTPIELRYPAFPTVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEELSQPGMHESRGGILYDFSVVIICFKSGHEQEVFCCRQWHKLVVWSCCNLKWEALVKTSSLLE*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||