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Report for Sequence Feature Glyma08g19140

Feature Type:gene_model
Chromosome:Gm08
Start:14446598
stop:14452438
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G78160AT Annotation by Michelle Graham. TAIR10: pumilio 7 | chr1:29407900-29410184 FORWARD LENGTH=650 SoyBaseE_val: 3.00E-146ISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003723GO-mf Annotation by Michelle Graham. GO Molecular Function: RNA binding SoyBaseN/AISS
GO:0003729GO-mf Annotation by Michelle Graham. GO Molecular Function: mRNA binding SoyBaseN/AISS
KOG2049 KOG Translational repressor MPT5/PUF4 and related RNA-binding proteins (Puf superfamily) JGI ISS
PTHR12537Panther RNA BINDING PROTEIN PUMILIO-RELATED JGI ISS
PTHR12537:SF13Panther PUMILIO-RELATED JGI ISS
PF00806PFAM Pumilio-family RNA binding repeat JGI ISS
UniRef100_G7INV5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Pumilio domain-containing protein n=1 Tax=Medicago truncatula RepID=G7INV5_MEDTR SoyBaseE_val: 3.00E-146ISS
UniRef100_UPI0002338FC4UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002338FC4 related cluster n=1 Tax=unknown RepID=UPI0002338FC4 SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma15g05856 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g179300 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma08g19140.2   sequence type=CDS   gene model=Glyma08g19140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAGAGAGACGATAGACAAAGTGAGAGACCATGGGGAACTGGAGGAGGAGCTAGAATTGTTGCTGGATGAGATCCCTCACGCCACATCACACAATCTCCTTCGCCACCATCATCATCATCATCATCATCATCATGGTGATGACGACGATGCCGTTTTCGTAACGAAACAGACACACCATGGTCACGCTCATGCTCATGGTATGTATTACGATGATGACTTCAAATCCCCTATGAGTGGGTTTTCTCTGCAATCTGACGGTTCTTCTTCGAGTTTGTTCTCGTCATCGCCTCCGCCTTTCGAGGACCTCAAATCCACCGTGGCTTCTAGAAGCTTCGATTCTAAGATCCCTGATTTCACTGTGAAGAAGCTCAATGAGTCTGAGAGGTTGGTTCATGAACTAGGCCTCTGCGCCGATTTCACTAAAATGCACATTGCTGATAATAACAATAATAATAATAATAATAGACGCCATAATCAGAATGTGCTTCCGTTTCGTGATTTTGTCAATCATGTTGGCGGTGGCGGCGGTGGTGGGGACTGTAACGGTTTTGAGAAAGGGTTTAGTGATTCTGTGGGGTTTCATTCCCCTTTAACTACTAGGACAAGGAGTTCTATCACTCATGCTGCTGAAATTAACACAGCATTGCCAGGATTGACTCAGGACTATAAAATGCCTAATTTATTTGGATCGTCGCAGCAGCCGTGTGCCAGATGGTGTGAACGTGACGGTATGGTGGTCTCTCGATTGAATGGATTCAGTGCTGGTTCAGTGGTTTCTCCTAGGCACCGCCTGATGAACGACTACCATTGTAGGGGAGGAACCATGGTGCCGGAGCTTGTTGGTTCCTTGAGCTGGAATCCAGCGTTTGATGCTTCGCTTTATGCGCAGAAATATGGAATGAGTTTATTCGAAGAAAGGGGGGTGTCAAGATTGCCTAGCAATTCTTCTTTTTGTACTAATTTTAAGCCTTGTATGAGTGTTCAGGAGTTGCTGCAGTATGGCCTTTCTCAGCCTAATAATCCTAATGCAAGAAGTGTGCCACTTTCGAATGCTAGGACTAGGATCCCCCAAGGAAATCTAGATGCTATTACAAGTGAGGGGAGTTTCATTATACAAGGGGAAGGTTTAAATTATTTAGGGGTTAGTAGGGGTTCGGATCCTCTAAGGTGTCAGCGTGATGTGCAGCACAAAAGTGGCTTTGCTAAGCAGCAGCTACACAGGTCAGAGCTAGACATCCGACACCAGGTTTTAGGATATGAAAATCCTAGGAGTCCAAGGAACGCTTGCTCATTCCCTTTGCTACCCAAGTATAATTCCCTAGCAGAAGCTCGAGGGTTGATATATTTAATAGCCAAAGATCAGCATGGCTGTAGATTCCTGCAAAGAATATTTGACGAGGGTACACCGGAGGATGTTCAAGTGATATTTAATGAGATAATTGATCATGTTGCGGAACTTATGATGAATCCTTTTGGCAATTACCTAATGCAGAAGTTGTTGGATGTCTGTGATGAAAAACAGAGAATGCAGATCATACTCATGGTGACCGAGGAGCCAGGGCAGCTTGTCAGAATTTCGTTAAACATTCACGGCACTCGTGTGGTACAGAAGCTGATTGAGACTCTCAAAACTAGGCAGCAAATTTCATTAGTTGTAGCAGCTCTTGAACCAGGATTCTTGGCCCTCATCAAAGATCTTAATGGAAATCATGTGGTTCAGCACTGTTTACAATGCCTAAGCAATGAAGATAACAAATTCATATTTGTTGCTGCTGCAAAGTATTGTGTTGACATTGCAACTCATCAACATGGATGTTGTGTTCTGCAAAGATGCATTGGTCATTCTAGAGGGGAGCACAGAGAAAAACTGGTTGAAGAAATATCTGCTAATGCACTTCTGCTAGCTCAAGATCAATTTGGAAATTATGTTGTTCAATTTATCTTGGACTTGAGGATTCCTTCGGCCACTGCAACTTTAAGCTTGCAATTTGAGCGTAAATATGTGCACCTGTCAATGCAGAAGTTCGGCAGCCATGTTGTTGAAAAATGTCTTGCAGTATTCAATGATGAGAATCAATCTAGAGTCATTCATGAACTGCTCTCTGCTCCTCACTTCGAACAGTTGCTTCAAGATCCACATGCAAATTATGTTATTCAATCAGCTCTTCGACATTCTGAGGGCCATGTGCATAATTTACTAGTCGAAGCCATTGAGTCCCACAAAGCAATTTCACGGAATAGCCCATATTCCAAGAAGATTTTCTCGCAGAAGCTTTTGAAGAAATGA

>Glyma08g19140.2   sequence type=predicted peptide   gene model=Glyma08g19140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MARETIDKVRDHGELEEELELLLDEIPHATSHNLLRHHHHHHHHHHGDDDDAVFVTKQTHHGHAHAHGMYYDDDFKSPMSGFSLQSDGSSSSLFSSSPPPFEDLKSTVASRSFDSKIPDFTVKKLNESERLVHELGLCADFTKMHIADNNNNNNNNRRHNQNVLPFRDFVNHVGGGGGGGDCNGFEKGFSDSVGFHSPLTTRTRSSITHAAEINTALPGLTQDYKMPNLFGSSQQPCARWCERDGMVVSRLNGFSAGSVVSPRHRLMNDYHCRGGTMVPELVGSLSWNPAFDASLYAQKYGMSLFEERGVSRLPSNSSFCTNFKPCMSVQELLQYGLSQPNNPNARSVPLSNARTRIPQGNLDAITSEGSFIIQGEGLNYLGVSRGSDPLRCQRDVQHKSGFAKQQLHRSELDIRHQVLGYENPRSPRNACSFPLLPKYNSLAEARGLIYLIAKDQHGCRFLQRIFDEGTPEDVQVIFNEIIDHVAELMMNPFGNYLMQKLLDVCDEKQRMQIILMVTEEPGQLVRISLNIHGTRVVQKLIETLKTRQQISLVVAALEPGFLALIKDLNGNHVVQHCLQCLSNEDNKFIFVAAAKYCVDIATHQHGCCVLQRCIGHSRGEHREKLVEEISANALLLAQDQFGNYVVQFILDLRIPSATATLSLQFERKYVHLSMQKFGSHVVEKCLAVFNDENQSRVIHELLSAPHFEQLLQDPHANYVIQSALRHSEGHVHNLLVEAIESHKAISRNSPYSKKIFSQKLLKK*







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