Glyma08g19033 - SoyBase

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Report for Sequence Feature Glyma08g19033

Feature Type:	gene_model
Chromosome:	Gm08
Start:	14361189
stop:	14366218
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g19033

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G22310	AT	Annotation by Michelle Graham. TAIR10: methyl-CPG-binding domain 8 \| chr1:7881714-7883418 REVERSE LENGTH=425	SoyBase	E_val: 8.00E-33	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0008327	GO-mf	Annotation by Michelle Graham. GO Molecular Function: methyl-CpG binding	SoyBase	N/A	ISS
UniRef100_G7IPJ6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Methyl binding domain protein n=1 Tax=Medicago truncatula RepID=G7IPJ6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_G7IPJ6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Methyl binding domain protein n=1 Tax=Medicago truncatula RepID=G7IPJ6_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g19033

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g19033 not represented in the dataset	Glyma08g19033 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g19033

Paralog	Evidence	Comments
Glyma15g05970	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g19033 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g178400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g19033

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g19033

Limit To All Plant Sequences

>Glyma08g19033.2   sequence type=transcript   gene model=Glyma08g19033   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGTCATTAAACAAGTGTAGTGTAATAAAACCCGTGGAGTGTGAAAAATAGAAGACGCAGAGAGAGAAGACCATTGACAAAAATAGAAAAATTTTGCAGACAGCAGTGAAACCGAAAGGAAGAAAAGAGAGAGGTAGGTTGTTCTTGATTGTGCAAAAATGGATGCAGAAGCAGCACCGTTGAAGTTGGAGTCCCTTGTGTGCATAGACTCCACCACTCTCTCTCATTCCGAGCTCCTCGCTCTTTCTCTCTCATCTCTCTCCACATTCGACCTCCGCTCCACCCATGACCTCGTCACTCCCAAGATCGACCCTTCCCTCTTCAACGAGAGCACCGGCTCCCACCGCCAAACCTACTCCCGCCCCCAGCAGTCCTCCCCCACCGGCCGCCGCCGCCGCCTCGCCGGCCTCCTCCCCAACAACCTCCCTCCCCTCCCCGAAAACCGCCTCATCATCGACTACCTCAAACAACTCATCAGAGACGACCCCAAGTTCGACCAAGTCCAACTCACTCCCCCTTCCCCTTCTCCTTCTCCTTCTCTCCCCCAACTCAAGAGGAAGCGTGGCAGAAAGCCCAAAGTCAAACTCCACTTGGACCCCTGCTACCGCGGTATCGACATAATTGTCAATCCAAACGGCGTCGCTGTGGATCTCCACCAACTCGCCAACTCCCAAGACCCCTTCGCTGAGGAACTCAAGAGACGCACTGAGGGTTTGCACAACGAAGAGGAGCTGCTAGGGTTTCTGAGAGACTTGCCCGGACAGTGGGGGAGCCGGAGGAAGAAGCGGAGGATCGTCGACGCCGCGGATTTCGGCGGCGACGTCTTGCCTCTTAGCTGGAAGATTCTTCTCGGTTTGAAGAGAAAGGATGGCCGTGCATGGATCTATTGCCGCAGATACATTAGCCCCAGTGGACAGCATTTTGTGTCTTGCAAAGAGGTTTCTTCCTATCTGCAGTCTCTTTTGGATAATAATGGTGATGCACAGTTGCAAATTATGAGGACTGAAAATGTAGTGCAGGAACACAATGTGCCTGCTGAAAATTCTGCAGGTGTTGCCCAGGAGCATCAAGATGAGAGGCAGATTGTTGCTGTGAACTCGGATGTGTCTGCTGCTAATGAACGAGAGAAGGAGGTTGCCTTGTTGGGGATTGAAAATCTCGCGGATGTGCAGATTCACGACCTGTTTGAATGTCGCAAGTGCAACATGAGTTTTGATGCGAAGGATTTGTACTTGCAGCACCTGTTGTCATTTCACCAGAGGACGACGAGGCGGTATCGACTTGGTTCATCAGTTGGAGATGGAGTTATAATTAAGGATGGGAAGTTTGAGTGCCAGTTCTGCCATAAGGTGTTTCTTGAAAGGCGTCGCTACAATGGTCATGTGGGGATCCATGTTAGGAATTATGTGAGGAAAGTTGAAGATTTGCCGGGTCAGGCAAATGTCCAGGGGACAGATGACAAGTCTCCTGTCAGGGGGCAGGATGTGCCTTTAAGGATATCAAAGATGGATGCCCTCATTGAAATTGCTCAAAACTCTATTATGGAGGATTCTGTCACTGAACCCCATAGTTCAGCTAAACTGAATAGGATTCCTGCTTCAGATATTGCTGTTGGTTACATAGATCAAGACAGAAACTCTGAGTCTCCTATCAGTGAACAGAAAATGGAAGATAGCATGACTGGAAATAATGTGGATCATGATTTGGATGAAGAATTAGTAGAGGAAATTGATGATGATAACCATGTGATTAATGTAAAGATGGTTACTTTTCTGGATAACGTGGGTTTGTTATCTGTAAATAAGCAGGATGTTAATGTACCTGAGACTTCTAAGGTAAAAGATGATGTGCCATTGACTATTGAGGAACTGGATCAGTCTGGGATGGATTTGGATGAGGATTCTCACAACTGTTTACTTCCTTTATCTGAACATCACATAATACCAGAATCTGAAAAGAGTGAAAATTCAGGATGTGCTAATACTAAGGGTCTATTTATACTTGATGAAGACATCAGTAACAAGACTGAGTTGGAATTTGGTTTAAATGGCTTGAAGGATGTGCCTGTTACTGTGAGCACTAATGTCCAAGAGATGGTAAGGCCAGCTTCTCAAGAAAATGTGGCACACTCTAGGGTTTTTAACTCCTCCATATCCACAGAACAATCTTTGGATTGTTTACCTGCATTCAGCTCTGATAAGGGAGAAGAACAGTTTTGTAGTGTTGACCATGAACATGATAATGTGAAGGGGTTCCAGGAATTGAGATTTGATGAAATAGATACTGCTGAGTGTGATTTTGCAAGGGTTCAAGTTTCTCCTCTTCCTGATGTACCAACTGAATTGACAAATAACACAGTGGTGGAAGGGACGTGTGCATCCCCAGTTCAGTTTGAATCACAAGTAGTTATGCTAAATATTGGTGGCAGAAATCAGCTTACAACTGTGTGTGTATGGTGTGGAATAGAGTTTAACCATGATGCTGTTAATTCTGAAATACAACCAGATTCTGTTGGATTCATGTGTCCAGCTTGTAAGGCAAAAATCTCTGGTCAAGTCAATGTGTTATTGGACTGTGGATCGCCAAATGCTGGCTGTCTATAGACTGTGGCAGGCAACCCCATATCATATTTCGTGTGAACTTCAAGCAGAGATTTTAGCTTTGGCAGCTGCATGATATTCCAAAGACAGTAGAAGGAGATGATCTAGAAGAAAAAAGCCAGGATTTGGAGGTTGATGGAATACTCAATTATAGATTGTATATTGGTTTTTATTAATTTCACCTCGTATGTTGTTTTGTCGTACATTGCCCCGTTCATTCGTATAGAAACCAATATTTAGTACTTTATTCTGCTGTAATAGTGTGCATAGGGCTTTCAATTTGAACTCCGTACATAACTAATGAGTGTATTCACAATTACACCAAATAAAATATGAATAACATACAGAAATGAGTTCTATGGAATTGTTATATTGTATTTCTTTGTGGTCAGTTTGTATAACATTTGAACTCTAATGTATTTATAT

Coding sequences of Glyma08g19033

Limit To All Plant Sequences

>Glyma08g19033.1   sequence type=CDS   gene model=Glyma08g19033   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGCAGAAGCAGCACCGTTGAAGTTGGAGTCCCTTGTGTGCATAGACTCCACCACTCTCTCTCATTCCGAGCTCCTCGCTCTTTCTCTCTCATCTCTCTCCACATTCGACCTCCGCTCCACCCATGACCTCGTCACTCCCAAGATCGACCCTTCCCTCTTCAACGAGAGCACCGGCTCCCACCGCCAAACCTACTCCCGCCCCCAGCAGTCCTCCCCCACCGGCCGCCGCCGCCGCCTCGCCGGCCTCCTCCCCAACAACCTCCCTCCCCTCCCCGAAAACCGCCTCATCATCGACTACCTCAAACAACTCATCAGAGACGACCCCAAGTTCGACCAAGTCCAACTCACTCCCCCTTCCCCTTCTCCTTCTCCTTCTCTCCCCCAACTCAAGAGGAAGCGTGGCAGAAAGCCCAAAGTCAAACTCCACTTGGACCCCTGCTACCGCGGTATCGACATAATTGTCAATCCAAACGGCGTCGCTGTGGATCTCCACCAACTCGCCAACTCCCAAGACCCCTTCGCTGAGGAACTCAAGAGACGCACTGAGGGTTTGCACAACGAAGAGGAGCTGCTAGGGTTTCTGAGAGACTTGCCCGGACAGTGGGGGAGCCGGAGGAAGAAGCGGAGGATCGTCGACGCCGCGGATTTCGGCGGCGACGTCTTGCCTCTTAGCTGGAAGATTCTTCTCGGTTTGAAGAGAAAGGATGGCCGTGCATGGATCTATTGCCGCAGATACATTAGCCCCAGTGGACAGCATTTTGTGTCTTGCAAAGAGGTTTCTTCCTATCTGCAGTCTCTTTTGGATAATAATGGTGATGCACAGTTGCAAATTATGAGGACTGAAAATGTAGTGCAGGAACACAATGTGCCTGCTGAAAATTCTGCAGGTGTTGCCCAGGAGCATCAAGATGAGAGGCAGATTGTTGCTGTGAACTCGGATGTGTCTGCTGCTAATGAACGAGAGAAGGAGGTTGCCTTGTTGGGGATTGAAAATCTCGCGGATGTGCAGATTCACGACCTGTTTGAATGTCGCAAGTGCAACATGAGTTTTGATGCGAAGGATTTGTACTTGCAGCACCTGTTGTCATTTCACCAGAGGACGACGAGGCGGTATCGACTTGGTTCATCAGTTGGAGATGGAGTTATAATTAAGGATGGGAAGTTTGAGTGCCAGTTCTGCCATAAGGTGTTTCTTGAAAGGCGTCGCTACAATGGTCATGTGGGGATCCATGTTAGGAATTATGTGAGGAAAGTTGAAGATTTGCCGGGTCAGGCAAATGTCCAGGGGACAGATGACAAGTCTCCTGTCAGGGGGCAGGATGTGCCTTTAAGGATATCAAAGATGGATGCCCTCATTGAAATTGCTCAAAACTCTATTATGGAGGATTCTGTCACTGAACCCCATAGTTCAGCTAAACTGAATAGGATTCCTGCTTCAGATATTGCTGTTGGTTACATAGATCAAGACAGAAACTCTGAGTCTCCTATCAGTGAACAGAAAATGGAAGATAGCATGACTGGAAATAATGTGGATCATGATTTGGATGAAGAATTAGTAGAGGAAATTGATGATGATAACCATGTGATTAATGTAAAGATGGTTACTTTTCTGGATAACGTGGGTTTGTTATCTGTAAATAAGCAGGATGTTAATGTACCTGAGACTTCTAAGGTAAAAGATGATGTGCCATTGACTATTGAGGAACTGGATCAGTCTGGGATGGATTTGGATGAGGATTCTCACAACTGTTTACTTCCTTTATCTGAACATCACATAATACCAGAATCTGAAAAGAGTGAAAATTCAGGATGTGCTAATACTAAGGGTCTATTTATACTTGATGAAGACATCAGTAACAAGACTGAGTTGGAATTTGGTTTAAATGGCTTGAAGGATGTGCCTGTTACTGTGAGCACTAATGTCCAAGAGATGGTAAGGCCAGCTTCTCAAGAAAATGTGGCACACTCTAGGGTTTTTAACTCCTCCATATCCACAGAACAATCTTTGGATTGTTTACCTGCATTCAGCTCTGATAAGGGAGAAGAACAGTTTTGTAGTGTTGACCATGAACATGATAATGTGAAGGGGTTCCAGGAATTGAGATTTGATGAAATAGATACTGCTGAGTGTGATTTTGCAAGGGTTCAAGTTTCTCCTCTTCCTGATGTACCAACTGAATTGACAAATAACACAGTGGTGGAAGGGACGTGTGCATCCCCAGTTCAGTTTGAATCACAAGTAGTTATGCTAAATATTGGTGGCAGAAATCAGCTTACAACTGTGTGTGTATGGTGTGGAATAGAGTTTAACCATGATGCTGTTAATTCTGAAATACAACCAGATTCTGTTGGATTCATGTGTCCAGCTTGTAAGGCAAAAATCTCTGGTCAAGTCAATGTGTTATTGGACTGTGGATCGCCAAATGCTGGCTGTCTATAG

>Glyma08g19033.2   sequence type=CDS   gene model=Glyma08g19033   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGCAGAAGCAGCACCGTTGAAGTTGGAGTCCCTTGTGTGCATAGACTCCACCACTCTCTCTCATTCCGAGCTCCTCGCTCTTTCTCTCTCATCTCTCTCCACATTCGACCTCCGCTCCACCCATGACCTCGTCACTCCCAAGATCGACCCTTCCCTCTTCAACGAGAGCACCGGCTCCCACCGCCAAACCTACTCCCGCCCCCAGCAGTCCTCCCCCACCGGCCGCCGCCGCCGCCTCGCCGGCCTCCTCCCCAACAACCTCCCTCCCCTCCCCGAAAACCGCCTCATCATCGACTACCTCAAACAACTCATCAGAGACGACCCCAAGTTCGACCAAGTCCAACTCACTCCCCCTTCCCCTTCTCCTTCTCCTTCTCTCCCCCAACTCAAGAGGAAGCGTGGCAGAAAGCCCAAAGTCAAACTCCACTTGGACCCCTGCTACCGCGGTATCGACATAATTGTCAATCCAAACGGCGTCGCTGTGGATCTCCACCAACTCGCCAACTCCCAAGACCCCTTCGCTGAGGAACTCAAGAGACGCACTGAGGGTTTGCACAACGAAGAGGAGCTGCTAGGGTTTCTGAGAGACTTGCCCGGACAGTGGGGGAGCCGGAGGAAGAAGCGGAGGATCGTCGACGCCGCGGATTTCGGCGGCGACGTCTTGCCTCTTAGCTGGAAGATTCTTCTCGGTTTGAAGAGAAAGGATGGCCGTGCATGGATCTATTGCCGCAGATACATTAGCCCCAGTGGACAGCATTTTGTGTCTTGCAAAGAGGTTTCTTCCTATCTGCAGTCTCTTTTGGATAATAATGGTGATGCACAGTTGCAAATTATGAGGACTGAAAATGTAGTGCAGGAACACAATGTGCCTGCTGAAAATTCTGCAGGTGTTGCCCAGGAGCATCAAGATGAGAGGCAGATTGTTGCTGTGAACTCGGATGTGTCTGCTGCTAATGAACGAGAGAAGGAGGTTGCCTTGTTGGGGATTGAAAATCTCGCGGATGTGCAGATTCACGACCTGTTTGAATGTCGCAAGTGCAACATGAGTTTTGATGCGAAGGATTTGTACTTGCAGCACCTGTTGTCATTTCACCAGAGGACGACGAGGCGGTATCGACTTGGTTCATCAGTTGGAGATGGAGTTATAATTAAGGATGGGAAGTTTGAGTGCCAGTTCTGCCATAAGGTGTTTCTTGAAAGGCGTCGCTACAATGGTCATGTGGGGATCCATGTTAGGAATTATGTGAGGAAAGTTGAAGATTTGCCGGGTCAGGCAAATGTCCAGGGGACAGATGACAAGTCTCCTGTCAGGGGGCAGGATGTGCCTTTAAGGATATCAAAGATGGATGCCCTCATTGAAATTGCTCAAAACTCTATTATGGAGGATTCTGTCACTGAACCCCATAGTTCAGCTAAACTGAATAGGATTCCTGCTTCAGATATTGCTGTTGGTTACATAGATCAAGACAGAAACTCTGAGTCTCCTATCAGTGAACAGAAAATGGAAGATAGCATGACTGGAAATAATGTGGATCATGATTTGGATGAAGAATTAGTAGAGGAAATTGATGATGATAACCATGTGATTAATGTAAAGATGGTTACTTTTCTGGATAACGTGGGTTTGTTATCTGTAAATAAGCAGGATGTTAATGTACCTGAGACTTCTAAGGTAAAAGATGATGTGCCATTGACTATTGAGGAACTGGATCAGTCTGGGATGGATTTGGATGAGGATTCTCACAACTGTTTACTTCCTTTATCTGAACATCACATAATACCAGAATCTGAAAAGAGTGAAAATTCAGGATGTGCTAATACTAAGGGTCTATTTATACTTGATGAAGACATCAGTAACAAGACTGAGTTGGAATTTGGTTTAAATGGCTTGAAGGATGTGCCTGTTACTGTGAGCACTAATGTCCAAGAGATGGTAAGGCCAGCTTCTCAAGAAAATGTGGCACACTCTAGGGTTTTTAACTCCTCCATATCCACAGAACAATCTTTGGATTGTTTACCTGCATTCAGCTCTGATAAGGGAGAAGAACAGTTTTGTAGTGTTGACCATGAACATGATAATGTGAAGGGGTTCCAGGAATTGAGATTTGATGAAATAGATACTGCTGAGTGTGATTTTGCAAGGGTTCAAGTTTCTCCTCTTCCTGATGTACCAACTGAATTGACAAATAACACAGTGGTGGAAGGGACGTGTGCATCCCCAGTTCAGTTTGAATCACAAGTAGTTATGCTAAATATTGGTGGCAGAAATCAGCTTACAACTGTGTGTGTATGGTGTGGAATAGAGTTTAACCATGATGCTGTTAATTCTGAAATACAACCAGATTCTGTTGGATTCATGTGTCCAGCTTGTAAGGCAAAAATCTCTGGTCAAGTCAATGTGTTATTGGACTGTGGATCGCCAAATGCTGGCTGTCTATAG

Predicted protein sequences of Glyma08g19033

Limit To All Plant Sequences

>Glyma08g19033.1   sequence type=predicted peptide   gene model=Glyma08g19033   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDAEAAPLKLESLVCIDSTTLSHSELLALSLSSLSTFDLRSTHDLVTPKIDPSLFNESTGSHRQTYSRPQQSSPTGRRRRLAGLLPNNLPPLPENRLIIDYLKQLIRDDPKFDQVQLTPPSPSPSPSLPQLKRKRGRKPKVKLHLDPCYRGIDIIVNPNGVAVDLHQLANSQDPFAEELKRRTEGLHNEEELLGFLRDLPGQWGSRRKKRRIVDAADFGGDVLPLSWKILLGLKRKDGRAWIYCRRYISPSGQHFVSCKEVSSYLQSLLDNNGDAQLQIMRTENVVQEHNVPAENSAGVAQEHQDERQIVAVNSDVSAANEREKEVALLGIENLADVQIHDLFECRKCNMSFDAKDLYLQHLLSFHQRTTRRYRLGSSVGDGVIIKDGKFECQFCHKVFLERRRYNGHVGIHVRNYVRKVEDLPGQANVQGTDDKSPVRGQDVPLRISKMDALIEIAQNSIMEDSVTEPHSSAKLNRIPASDIAVGYIDQDRNSESPISEQKMEDSMTGNNVDHDLDEELVEEIDDDNHVINVKMVTFLDNVGLLSVNKQDVNVPETSKVKDDVPLTIEELDQSGMDLDEDSHNCLLPLSEHHIIPESEKSENSGCANTKGLFILDEDISNKTELEFGLNGLKDVPVTVSTNVQEMVRPASQENVAHSRVFNSSISTEQSLDCLPAFSSDKGEEQFCSVDHEHDNVKGFQELRFDEIDTAECDFARVQVSPLPDVPTELTNNTVVEGTCASPVQFESQVVMLNIGGRNQLTTVCVWCGIEFNHDAVNSEIQPDSVGFMCPACKAKISGQVNVLLDCGSPNAGCL*

>Glyma08g19033.2   sequence type=predicted peptide   gene model=Glyma08g19033   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDAEAAPLKLESLVCIDSTTLSHSELLALSLSSLSTFDLRSTHDLVTPKIDPSLFNESTGSHRQTYSRPQQSSPTGRRRRLAGLLPNNLPPLPENRLIIDYLKQLIRDDPKFDQVQLTPPSPSPSPSLPQLKRKRGRKPKVKLHLDPCYRGIDIIVNPNGVAVDLHQLANSQDPFAEELKRRTEGLHNEEELLGFLRDLPGQWGSRRKKRRIVDAADFGGDVLPLSWKILLGLKRKDGRAWIYCRRYISPSGQHFVSCKEVSSYLQSLLDNNGDAQLQIMRTENVVQEHNVPAENSAGVAQEHQDERQIVAVNSDVSAANEREKEVALLGIENLADVQIHDLFECRKCNMSFDAKDLYLQHLLSFHQRTTRRYRLGSSVGDGVIIKDGKFECQFCHKVFLERRRYNGHVGIHVRNYVRKVEDLPGQANVQGTDDKSPVRGQDVPLRISKMDALIEIAQNSIMEDSVTEPHSSAKLNRIPASDIAVGYIDQDRNSESPISEQKMEDSMTGNNVDHDLDEELVEEIDDDNHVINVKMVTFLDNVGLLSVNKQDVNVPETSKVKDDVPLTIEELDQSGMDLDEDSHNCLLPLSEHHIIPESEKSENSGCANTKGLFILDEDISNKTELEFGLNGLKDVPVTVSTNVQEMVRPASQENVAHSRVFNSSISTEQSLDCLPAFSSDKGEEQFCSVDHEHDNVKGFQELRFDEIDTAECDFARVQVSPLPDVPTELTNNTVVEGTCASPVQFESQVVMLNIGGRNQLTTVCVWCGIEFNHDAVNSEIQPDSVGFMCPACKAKISGQVNVLLDCGSPNAGCL*

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