SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G22310 | AT | Annotation by Michelle Graham. TAIR10: methyl-CPG-binding domain 8 | chr1:7881714-7883418 REVERSE LENGTH=425 | SoyBase | E_val: 8.00E-33 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0008327 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: methyl-CpG binding | SoyBase | N/A | ISS |
| UniRef100_G7IPJ6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Methyl binding domain protein n=1 Tax=Medicago truncatula RepID=G7IPJ6_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_G7IPJ6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Methyl binding domain protein n=1 Tax=Medicago truncatula RepID=G7IPJ6_MEDTR | SoyBase | E_val: 0 | ISS |
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Glyma08g19033 not represented in the dataset |
Glyma08g19033 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma15g05970 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g178400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g19033.2 sequence type=transcript gene model=Glyma08g19033 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GGTCATTAAACAAGTGTAGTGTAATAAAACCCGTGGAGTGTGAAAAATAGAAGACGCAGAGAGAGAAGACCATTGACAAAAATAGAAAAATTTTGCAGACAGCAGTGAAACCGAAAGGAAGAAAAGAGAGAGGTAGGTTGTTCTTGATTGTGCAAAAATGGATGCAGAAGCAGCACCGTTGAAGTTGGAGTCCCTTGTGTGCATAGACTCCACCACTCTCTCTCATTCCGAGCTCCTCGCTCTTTCTCTCTCATCTCTCTCCACATTCGACCTCCGCTCCACCCATGACCTCGTCACTCCCAAGATCGACCCTTCCCTCTTCAACGAGAGCACCGGCTCCCACCGCCAAACCTACTCCCGCCCCCAGCAGTCCTCCCCCACCGGCCGCCGCCGCCGCCTCGCCGGCCTCCTCCCCAACAACCTCCCTCCCCTCCCCGAAAACCGCCTCATCATCGACTACCTCAAACAACTCATCAGAGACGACCCCAAGTTCGACCAAGTCCAACTCACTCCCCCTTCCCCTTCTCCTTCTCCTTCTCTCCCCCAACTCAAGAGGAAGCGTGGCAGAAAGCCCAAAGTCAAACTCCACTTGGACCCCTGCTACCGCGGTATCGACATAATTGTCAATCCAAACGGCGTCGCTGTGGATCTCCACCAACTCGCCAACTCCCAAGACCCCTTCGCTGAGGAACTCAAGAGACGCACTGAGGGTTTGCACAACGAAGAGGAGCTGCTAGGGTTTCTGAGAGACTTGCCCGGACAGTGGGGGAGCCGGAGGAAGAAGCGGAGGATCGTCGACGCCGCGGATTTCGGCGGCGACGTCTTGCCTCTTAGCTGGAAGATTCTTCTCGGTTTGAAGAGAAAGGATGGCCGTGCATGGATCTATTGCCGCAGATACATTAGCCCCAGTGGACAGCATTTTGTGTCTTGCAAAGAGGTTTCTTCCTATCTGCAGTCTCTTTTGGATAATAATGGTGATGCACAGTTGCAAATTATGAGGACTGAAAATGTAGTGCAGGAACACAATGTGCCTGCTGAAAATTCTGCAGGTGTTGCCCAGGAGCATCAAGATGAGAGGCAGATTGTTGCTGTGAACTCGGATGTGTCTGCTGCTAATGAACGAGAGAAGGAGGTTGCCTTGTTGGGGATTGAAAATCTCGCGGATGTGCAGATTCACGACCTGTTTGAATGTCGCAAGTGCAACATGAGTTTTGATGCGAAGGATTTGTACTTGCAGCACCTGTTGTCATTTCACCAGAGGACGACGAGGCGGTATCGACTTGGTTCATCAGTTGGAGATGGAGTTATAATTAAGGATGGGAAGTTTGAGTGCCAGTTCTGCCATAAGGTGTTTCTTGAAAGGCGTCGCTACAATGGTCATGTGGGGATCCATGTTAGGAATTATGTGAGGAAAGTTGAAGATTTGCCGGGTCAGGCAAATGTCCAGGGGACAGATGACAAGTCTCCTGTCAGGGGGCAGGATGTGCCTTTAAGGATATCAAAGATGGATGCCCTCATTGAAATTGCTCAAAACTCTATTATGGAGGATTCTGTCACTGAACCCCATAGTTCAGCTAAACTGAATAGGATTCCTGCTTCAGATATTGCTGTTGGTTACATAGATCAAGACAGAAACTCTGAGTCTCCTATCAGTGAACAGAAAATGGAAGATAGCATGACTGGAAATAATGTGGATCATGATTTGGATGAAGAATTAGTAGAGGAAATTGATGATGATAACCATGTGATTAATGTAAAGATGGTTACTTTTCTGGATAACGTGGGTTTGTTATCTGTAAATAAGCAGGATGTTAATGTACCTGAGACTTCTAAGGTAAAAGATGATGTGCCATTGACTATTGAGGAACTGGATCAGTCTGGGATGGATTTGGATGAGGATTCTCACAACTGTTTACTTCCTTTATCTGAACATCACATAATACCAGAATCTGAAAAGAGTGAAAATTCAGGATGTGCTAATACTAAGGGTCTATTTATACTTGATGAAGACATCAGTAACAAGACTGAGTTGGAATTTGGTTTAAATGGCTTGAAGGATGTGCCTGTTACTGTGAGCACTAATGTCCAAGAGATGGTAAGGCCAGCTTCTCAAGAAAATGTGGCACACTCTAGGGTTTTTAACTCCTCCATATCCACAGAACAATCTTTGGATTGTTTACCTGCATTCAGCTCTGATAAGGGAGAAGAACAGTTTTGTAGTGTTGACCATGAACATGATAATGTGAAGGGGTTCCAGGAATTGAGATTTGATGAAATAGATACTGCTGAGTGTGATTTTGCAAGGGTTCAAGTTTCTCCTCTTCCTGATGTACCAACTGAATTGACAAATAACACAGTGGTGGAAGGGACGTGTGCATCCCCAGTTCAGTTTGAATCACAAGTAGTTATGCTAAATATTGGTGGCAGAAATCAGCTTACAACTGTGTGTGTATGGTGTGGAATAGAGTTTAACCATGATGCTGTTAATTCTGAAATACAACCAGATTCTGTTGGATTCATGTGTCCAGCTTGTAAGGCAAAAATCTCTGGTCAAGTCAATGTGTTATTGGACTGTGGATCGCCAAATGCTGGCTGTCTATAGACTGTGGCAGGCAACCCCATATCATATTTCGTGTGAACTTCAAGCAGAGATTTTAGCTTTGGCAGCTGCATGATATTCCAAAGACAGTAGAAGGAGATGATCTAGAAGAAAAAAGCCAGGATTTGGAGGTTGATGGAATACTCAATTATAGATTGTATATTGGTTTTTATTAATTTCACCTCGTATGTTGTTTTGTCGTACATTGCCCCGTTCATTCGTATAGAAACCAATATTTAGTACTTTATTCTGCTGTAATAGTGTGCATAGGGCTTTCAATTTGAACTCCGTACATAACTAATGAGTGTATTCACAATTACACCAAATAAAATATGAATAACATACAGAAATGAGTTCTATGGAATTGTTATATTGTATTTCTTTGTGGTCAGTTTGTATAACATTTGAACTCTAATGTATTTATAT
>Glyma08g19033.1 sequence type=CDS gene model=Glyma08g19033 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATGCAGAAGCAGCACCGTTGAAGTTGGAGTCCCTTGTGTGCATAGACTCCACCACTCTCTCTCATTCCGAGCTCCTCGCTCTTTCTCTCTCATCTCTCTCCACATTCGACCTCCGCTCCACCCATGACCTCGTCACTCCCAAGATCGACCCTTCCCTCTTCAACGAGAGCACCGGCTCCCACCGCCAAACCTACTCCCGCCCCCAGCAGTCCTCCCCCACCGGCCGCCGCCGCCGCCTCGCCGGCCTCCTCCCCAACAACCTCCCTCCCCTCCCCGAAAACCGCCTCATCATCGACTACCTCAAACAACTCATCAGAGACGACCCCAAGTTCGACCAAGTCCAACTCACTCCCCCTTCCCCTTCTCCTTCTCCTTCTCTCCCCCAACTCAAGAGGAAGCGTGGCAGAAAGCCCAAAGTCAAACTCCACTTGGACCCCTGCTACCGCGGTATCGACATAATTGTCAATCCAAACGGCGTCGCTGTGGATCTCCACCAACTCGCCAACTCCCAAGACCCCTTCGCTGAGGAACTCAAGAGACGCACTGAGGGTTTGCACAACGAAGAGGAGCTGCTAGGGTTTCTGAGAGACTTGCCCGGACAGTGGGGGAGCCGGAGGAAGAAGCGGAGGATCGTCGACGCCGCGGATTTCGGCGGCGACGTCTTGCCTCTTAGCTGGAAGATTCTTCTCGGTTTGAAGAGAAAGGATGGCCGTGCATGGATCTATTGCCGCAGATACATTAGCCCCAGTGGACAGCATTTTGTGTCTTGCAAAGAGGTTTCTTCCTATCTGCAGTCTCTTTTGGATAATAATGGTGATGCACAGTTGCAAATTATGAGGACTGAAAATGTAGTGCAGGAACACAATGTGCCTGCTGAAAATTCTGCAGGTGTTGCCCAGGAGCATCAAGATGAGAGGCAGATTGTTGCTGTGAACTCGGATGTGTCTGCTGCTAATGAACGAGAGAAGGAGGTTGCCTTGTTGGGGATTGAAAATCTCGCGGATGTGCAGATTCACGACCTGTTTGAATGTCGCAAGTGCAACATGAGTTTTGATGCGAAGGATTTGTACTTGCAGCACCTGTTGTCATTTCACCAGAGGACGACGAGGCGGTATCGACTTGGTTCATCAGTTGGAGATGGAGTTATAATTAAGGATGGGAAGTTTGAGTGCCAGTTCTGCCATAAGGTGTTTCTTGAAAGGCGTCGCTACAATGGTCATGTGGGGATCCATGTTAGGAATTATGTGAGGAAAGTTGAAGATTTGCCGGGTCAGGCAAATGTCCAGGGGACAGATGACAAGTCTCCTGTCAGGGGGCAGGATGTGCCTTTAAGGATATCAAAGATGGATGCCCTCATTGAAATTGCTCAAAACTCTATTATGGAGGATTCTGTCACTGAACCCCATAGTTCAGCTAAACTGAATAGGATTCCTGCTTCAGATATTGCTGTTGGTTACATAGATCAAGACAGAAACTCTGAGTCTCCTATCAGTGAACAGAAAATGGAAGATAGCATGACTGGAAATAATGTGGATCATGATTTGGATGAAGAATTAGTAGAGGAAATTGATGATGATAACCATGTGATTAATGTAAAGATGGTTACTTTTCTGGATAACGTGGGTTTGTTATCTGTAAATAAGCAGGATGTTAATGTACCTGAGACTTCTAAGGTAAAAGATGATGTGCCATTGACTATTGAGGAACTGGATCAGTCTGGGATGGATTTGGATGAGGATTCTCACAACTGTTTACTTCCTTTATCTGAACATCACATAATACCAGAATCTGAAAAGAGTGAAAATTCAGGATGTGCTAATACTAAGGGTCTATTTATACTTGATGAAGACATCAGTAACAAGACTGAGTTGGAATTTGGTTTAAATGGCTTGAAGGATGTGCCTGTTACTGTGAGCACTAATGTCCAAGAGATGGTAAGGCCAGCTTCTCAAGAAAATGTGGCACACTCTAGGGTTTTTAACTCCTCCATATCCACAGAACAATCTTTGGATTGTTTACCTGCATTCAGCTCTGATAAGGGAGAAGAACAGTTTTGTAGTGTTGACCATGAACATGATAATGTGAAGGGGTTCCAGGAATTGAGATTTGATGAAATAGATACTGCTGAGTGTGATTTTGCAAGGGTTCAAGTTTCTCCTCTTCCTGATGTACCAACTGAATTGACAAATAACACAGTGGTGGAAGGGACGTGTGCATCCCCAGTTCAGTTTGAATCACAAGTAGTTATGCTAAATATTGGTGGCAGAAATCAGCTTACAACTGTGTGTGTATGGTGTGGAATAGAGTTTAACCATGATGCTGTTAATTCTGAAATACAACCAGATTCTGTTGGATTCATGTGTCCAGCTTGTAAGGCAAAAATCTCTGGTCAAGTCAATGTGTTATTGGACTGTGGATCGCCAAATGCTGGCTGTCTATAG >Glyma08g19033.2 sequence type=CDS gene model=Glyma08g19033 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATGCAGAAGCAGCACCGTTGAAGTTGGAGTCCCTTGTGTGCATAGACTCCACCACTCTCTCTCATTCCGAGCTCCTCGCTCTTTCTCTCTCATCTCTCTCCACATTCGACCTCCGCTCCACCCATGACCTCGTCACTCCCAAGATCGACCCTTCCCTCTTCAACGAGAGCACCGGCTCCCACCGCCAAACCTACTCCCGCCCCCAGCAGTCCTCCCCCACCGGCCGCCGCCGCCGCCTCGCCGGCCTCCTCCCCAACAACCTCCCTCCCCTCCCCGAAAACCGCCTCATCATCGACTACCTCAAACAACTCATCAGAGACGACCCCAAGTTCGACCAAGTCCAACTCACTCCCCCTTCCCCTTCTCCTTCTCCTTCTCTCCCCCAACTCAAGAGGAAGCGTGGCAGAAAGCCCAAAGTCAAACTCCACTTGGACCCCTGCTACCGCGGTATCGACATAATTGTCAATCCAAACGGCGTCGCTGTGGATCTCCACCAACTCGCCAACTCCCAAGACCCCTTCGCTGAGGAACTCAAGAGACGCACTGAGGGTTTGCACAACGAAGAGGAGCTGCTAGGGTTTCTGAGAGACTTGCCCGGACAGTGGGGGAGCCGGAGGAAGAAGCGGAGGATCGTCGACGCCGCGGATTTCGGCGGCGACGTCTTGCCTCTTAGCTGGAAGATTCTTCTCGGTTTGAAGAGAAAGGATGGCCGTGCATGGATCTATTGCCGCAGATACATTAGCCCCAGTGGACAGCATTTTGTGTCTTGCAAAGAGGTTTCTTCCTATCTGCAGTCTCTTTTGGATAATAATGGTGATGCACAGTTGCAAATTATGAGGACTGAAAATGTAGTGCAGGAACACAATGTGCCTGCTGAAAATTCTGCAGGTGTTGCCCAGGAGCATCAAGATGAGAGGCAGATTGTTGCTGTGAACTCGGATGTGTCTGCTGCTAATGAACGAGAGAAGGAGGTTGCCTTGTTGGGGATTGAAAATCTCGCGGATGTGCAGATTCACGACCTGTTTGAATGTCGCAAGTGCAACATGAGTTTTGATGCGAAGGATTTGTACTTGCAGCACCTGTTGTCATTTCACCAGAGGACGACGAGGCGGTATCGACTTGGTTCATCAGTTGGAGATGGAGTTATAATTAAGGATGGGAAGTTTGAGTGCCAGTTCTGCCATAAGGTGTTTCTTGAAAGGCGTCGCTACAATGGTCATGTGGGGATCCATGTTAGGAATTATGTGAGGAAAGTTGAAGATTTGCCGGGTCAGGCAAATGTCCAGGGGACAGATGACAAGTCTCCTGTCAGGGGGCAGGATGTGCCTTTAAGGATATCAAAGATGGATGCCCTCATTGAAATTGCTCAAAACTCTATTATGGAGGATTCTGTCACTGAACCCCATAGTTCAGCTAAACTGAATAGGATTCCTGCTTCAGATATTGCTGTTGGTTACATAGATCAAGACAGAAACTCTGAGTCTCCTATCAGTGAACAGAAAATGGAAGATAGCATGACTGGAAATAATGTGGATCATGATTTGGATGAAGAATTAGTAGAGGAAATTGATGATGATAACCATGTGATTAATGTAAAGATGGTTACTTTTCTGGATAACGTGGGTTTGTTATCTGTAAATAAGCAGGATGTTAATGTACCTGAGACTTCTAAGGTAAAAGATGATGTGCCATTGACTATTGAGGAACTGGATCAGTCTGGGATGGATTTGGATGAGGATTCTCACAACTGTTTACTTCCTTTATCTGAACATCACATAATACCAGAATCTGAAAAGAGTGAAAATTCAGGATGTGCTAATACTAAGGGTCTATTTATACTTGATGAAGACATCAGTAACAAGACTGAGTTGGAATTTGGTTTAAATGGCTTGAAGGATGTGCCTGTTACTGTGAGCACTAATGTCCAAGAGATGGTAAGGCCAGCTTCTCAAGAAAATGTGGCACACTCTAGGGTTTTTAACTCCTCCATATCCACAGAACAATCTTTGGATTGTTTACCTGCATTCAGCTCTGATAAGGGAGAAGAACAGTTTTGTAGTGTTGACCATGAACATGATAATGTGAAGGGGTTCCAGGAATTGAGATTTGATGAAATAGATACTGCTGAGTGTGATTTTGCAAGGGTTCAAGTTTCTCCTCTTCCTGATGTACCAACTGAATTGACAAATAACACAGTGGTGGAAGGGACGTGTGCATCCCCAGTTCAGTTTGAATCACAAGTAGTTATGCTAAATATTGGTGGCAGAAATCAGCTTACAACTGTGTGTGTATGGTGTGGAATAGAGTTTAACCATGATGCTGTTAATTCTGAAATACAACCAGATTCTGTTGGATTCATGTGTCCAGCTTGTAAGGCAAAAATCTCTGGTCAAGTCAATGTGTTATTGGACTGTGGATCGCCAAATGCTGGCTGTCTATAG
>Glyma08g19033.1 sequence type=predicted peptide gene model=Glyma08g19033 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDAEAAPLKLESLVCIDSTTLSHSELLALSLSSLSTFDLRSTHDLVTPKIDPSLFNESTGSHRQTYSRPQQSSPTGRRRRLAGLLPNNLPPLPENRLIIDYLKQLIRDDPKFDQVQLTPPSPSPSPSLPQLKRKRGRKPKVKLHLDPCYRGIDIIVNPNGVAVDLHQLANSQDPFAEELKRRTEGLHNEEELLGFLRDLPGQWGSRRKKRRIVDAADFGGDVLPLSWKILLGLKRKDGRAWIYCRRYISPSGQHFVSCKEVSSYLQSLLDNNGDAQLQIMRTENVVQEHNVPAENSAGVAQEHQDERQIVAVNSDVSAANEREKEVALLGIENLADVQIHDLFECRKCNMSFDAKDLYLQHLLSFHQRTTRRYRLGSSVGDGVIIKDGKFECQFCHKVFLERRRYNGHVGIHVRNYVRKVEDLPGQANVQGTDDKSPVRGQDVPLRISKMDALIEIAQNSIMEDSVTEPHSSAKLNRIPASDIAVGYIDQDRNSESPISEQKMEDSMTGNNVDHDLDEELVEEIDDDNHVINVKMVTFLDNVGLLSVNKQDVNVPETSKVKDDVPLTIEELDQSGMDLDEDSHNCLLPLSEHHIIPESEKSENSGCANTKGLFILDEDISNKTELEFGLNGLKDVPVTVSTNVQEMVRPASQENVAHSRVFNSSISTEQSLDCLPAFSSDKGEEQFCSVDHEHDNVKGFQELRFDEIDTAECDFARVQVSPLPDVPTELTNNTVVEGTCASPVQFESQVVMLNIGGRNQLTTVCVWCGIEFNHDAVNSEIQPDSVGFMCPACKAKISGQVNVLLDCGSPNAGCL* >Glyma08g19033.2 sequence type=predicted peptide gene model=Glyma08g19033 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDAEAAPLKLESLVCIDSTTLSHSELLALSLSSLSTFDLRSTHDLVTPKIDPSLFNESTGSHRQTYSRPQQSSPTGRRRRLAGLLPNNLPPLPENRLIIDYLKQLIRDDPKFDQVQLTPPSPSPSPSLPQLKRKRGRKPKVKLHLDPCYRGIDIIVNPNGVAVDLHQLANSQDPFAEELKRRTEGLHNEEELLGFLRDLPGQWGSRRKKRRIVDAADFGGDVLPLSWKILLGLKRKDGRAWIYCRRYISPSGQHFVSCKEVSSYLQSLLDNNGDAQLQIMRTENVVQEHNVPAENSAGVAQEHQDERQIVAVNSDVSAANEREKEVALLGIENLADVQIHDLFECRKCNMSFDAKDLYLQHLLSFHQRTTRRYRLGSSVGDGVIIKDGKFECQFCHKVFLERRRYNGHVGIHVRNYVRKVEDLPGQANVQGTDDKSPVRGQDVPLRISKMDALIEIAQNSIMEDSVTEPHSSAKLNRIPASDIAVGYIDQDRNSESPISEQKMEDSMTGNNVDHDLDEELVEEIDDDNHVINVKMVTFLDNVGLLSVNKQDVNVPETSKVKDDVPLTIEELDQSGMDLDEDSHNCLLPLSEHHIIPESEKSENSGCANTKGLFILDEDISNKTELEFGLNGLKDVPVTVSTNVQEMVRPASQENVAHSRVFNSSISTEQSLDCLPAFSSDKGEEQFCSVDHEHDNVKGFQELRFDEIDTAECDFARVQVSPLPDVPTELTNNTVVEGTCASPVQFESQVVMLNIGGRNQLTTVCVWCGIEFNHDAVNSEIQPDSVGFMCPACKAKISGQVNVLLDCGSPNAGCL*
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