Glyma08g18990 - SoyBase

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Report for Sequence Feature Glyma08g18990

Feature Type:	gene_model
Chromosome:	Gm08
Start:	14334878
stop:	14342488
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g18990

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G64250	AT	Annotation by Michelle Graham. TAIR10: Aldolase-type TIM barrel family protein \| chr5:25697623-25698945 REVERSE LENGTH=333	SoyBase	E_val: 0	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009610	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to symbiotic fungus	SoyBase	N/A	ISS
GO:0046482	GO-bp	Annotation by Michelle Graham. GO Biological Process: para-aminobenzoic acid metabolic process	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0003938	GO-mf	Annotation by Michelle Graham. GO Molecular Function: IMP dehydrogenase activity	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0018580	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nitronate monooxygenase activity	SoyBase	N/A	ISS
PF03060	PFAM	2-nitropropane dioxygenase	JGI		ISS
UniRef100_G7J9Z8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 2-nitropropane dioxygenase-like protein n=1 Tax=Medicago truncatula RepID=G7J9Z8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KUC1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KUC1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g18990

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g18990 not represented in the dataset	Glyma08g18990 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g18990 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g178100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g18990

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g18990

Limit To All Plant Sequences

>Glyma08g18990.3   sequence type=transcript   gene model=Glyma08g18990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGACAAGAAGTGAAGGATTAACATCCAACGTAGACTATGTAATATCTCAGTTGCACGCATCACATCAGCAATACTGTACAAAACAACAACGTACGACGTGTTCGCTTACGTTTGAGTTGATGGAGACTAGCGAAGAAACATAGAGAAGGCACGTGTTTTTGTTGTTGGTGTTCTAGTGTATAAAGCCTCACGCAAGCAGGGTCCCTTGTCAGATCCACCACTAATTAATTGTTAAAGGAAGCGAAAGAAAGATTGATCAAATTATCGCAGAGGAATTGAAGATGGGTTGGAGAGGGATACTGGGTTTTGAATATGGTATAGTTCAGGCCCCATTAGGCCCTGATATCTCTGCTCCCCCACTTGTTGCTGCAGTTGCCAATGCTGGTGCTCTTGGACTTCTTAGGGCCCCTGATTGGGAATCGCCGGATTACTTGAGGGAACTCATAAAGACGACTAGGACCTTAACTGATAAACCCTTCGGGGTTGGCGTCGTTCTAGCTTTTCCTTTTGAGGAGAATTTGAATGTCATTTTGGAAGAAAAAGTTGCAGTCTTGCAAGTTTATTGGGGTGATTGTACAAGGGAATTGGTGAATAAGGCTCATTCCGCTGGGATCAAAGTTGTTCCTCAAGTTGGGAATATTGAAGGTGCGAAGCAGGCAATTGAAGCAGGTGCCGATGGAATAATTGTACAAGGACTTGAAGCCGGTGGTCATGTCATTGGTCAGGATGGTCTAATTACATTGGTGCCCAGAGTGGTTGATCTTGTTGGTGACCGAGAGATACCAGTTATTGCAGCTGGAGGAATTGTGGATGCTCGGGGTTATGTTGCTGCTCTAGCACTTGGTGCTCAAGGCGTCTGTCTAGGCACTAGGTTTTTGGCTACTGAGGAAAGCAATGCTCATCCTACATACAAAAGGAAGTTACTTGAACTTGATGAAACTGCGTACACGGATGTATTTGGGAGGGCAAGATGGCCTGGCGCCCCTCAGCGTGTCTTGCAGACACCTTTCTATAAGGAATGGAGATCCCTTCCGCCACATGAAAGTGAAGCCAACAAGCCTGTCATTGGCCATTCAACAATTAATGGCGTGGATAAAGAGATACGGCGTTTTGCAGGTACCGTCCCAAACAAGACAACTACTGGAGATCTTGAGAGCATGGTGATGTATGCTGGCCAAGGTGTTGGTCTCATCAAGGAAATTCTGCCTGCTGGTGAAGTGGTAAAGAGGCTAGTTGAAGGGGCACAGCTTATAATGCAGCAAAACTTTAAATAGATTGTCAAATCTCAATAGCAGGCTTACATTCACTAGATTTCTAGTGGCCTGAAATAACAAGAGTGCCAGCTTCAAATCAAAATTCATTTGGAGAAATATGTAATATTCACAGTGCTACAGGAAAAAAATAATCAAATCTTCTTGAAACATTGCTTCACCAATCACCATTATACATAATTGAAAATAAAATAAACCAAGTTAATATATTTTTAGCAGCCCCTCCTTAATCACTTAGTCCAAGTTGATGCATGAAGAACTACGAAGTCTTCTTTTTTCATTGCAATGATTGTTTGTCTCATGTTATTTTCTCTCTCCCCCATCATCAATTCATGGACTTGCTTGTCCACCTCGATGCTCTCTGCACATCAGTATCAATGCCCCATTCAATGGACAAATGACGTGAATAATATTAGTTTCATTATTTACCCATGGTTTGATTGCCAAGAAAATATTAGTACTATTCAAGGAGAAATTTTTTGTTTCCATACCTCC

Coding sequences of Glyma08g18990

Limit To All Plant Sequences

>Glyma08g18990.2   sequence type=CDS   gene model=Glyma08g18990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTGGAGAGGGATACTGGGTTTTGAATATGGTATAGTTCAGGCCCCATTAGGCCCTGATATCTCTGCTCCCCCACTTGTTGCTGCAGTTGCCAATGCTGGTGCTCTTGGACTTCTTAGGGCCCCTGATTGGGAATCGCCGGATTACTTGAGGGAACTCATAAAGACGACTAGGACCTTAACTGATAAACCCTTCGGGGTTGGCGTCGTTCTAGCTTTTCCTTTTGAGGAGAATTTGAATGTCATTTTGGAAGAAAAAGTTGCAGTCTTGCAAGTTTATTGGGGTGATTGTACAAGGGAATTGGTGAATAAGGCTCATTCCGCTGGGATCAAAGTTGTTCCTCAAGTTGGGAATATTGAAGGTGCGAAGCAGGCAATTGAAGCAGGTGCCGATGGAATAATTGTACAAGGACTTGAAGCCGGTGGTCATGTCATTGGTCAGGATGGTCTAATTACATTGGTGCCCAGAGTGGTTGATCTTGTTGGTGACCGAGAGATACCAGTTATTGCAGCTGGAGGAATTGTGGATGCTCGGGGTTATGTTGCTGCTCTAGCACTTGGTGCTCAAGGCGTCTGTCTAGGCACTAGGTTTTTGGCTACTGAGGAAAGCAATGCTCATCCTACATACAAAAGGAAGTTACTTGAACTTGATGAAACTGCGTACACGGATGTATTTGGGAGGGCAAGATGGCCTGGCGCCCCTCAGCGTGTCTTGCAGACACCTTTCTATAAGGAATGGAGATCCCTTCCGCCACATGAAAGTGAAGCCAACAAGCCTGTCATTGGCCATTCAACAATTAATGGCGTGGATAAAGAGATACGGCGTTTTGCAGGTACCGTCCCAAACAAGACAACTACTGGAGATCTTGAGAGCATGGTGATGTATGCTGGCCAAGGTGTTGGTCTCATCAAGGAAATTCTGCCTGCTGGTGAAGTGGTAAAGAGGCTAGTTGAAGGGGCACAGCTTATAATGCAGCAAAACTTTAAATAG

>Glyma08g18990.3   sequence type=CDS   gene model=Glyma08g18990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTGGAGAGGGATACTGGGTTTTGAATATGGTATAGTTCAGGCCCCATTAGGCCCTGATATCTCTGCTCCCCCACTTGTTGCTGCAGTTGCCAATGCTGGTGCTCTTGGACTTCTTAGGGCCCCTGATTGGGAATCGCCGGATTACTTGAGGGAACTCATAAAGACGACTAGGACCTTAACTGATAAACCCTTCGGGGTTGGCGTCGTTCTAGCTTTTCCTTTTGAGGAGAATTTGAATGTCATTTTGGAAGAAAAAGTTGCAGTCTTGCAAGTTTATTGGGGTGATTGTACAAGGGAATTGGTGAATAAGGCTCATTCCGCTGGGATCAAAGTTGTTCCTCAAGTTGGGAATATTGAAGGTGCGAAGCAGGCAATTGAAGCAGGTGCCGATGGAATAATTGTACAAGGACTTGAAGCCGGTGGTCATGTCATTGGTCAGGATGGTCTAATTACATTGGTGCCCAGAGTGGTTGATCTTGTTGGTGACCGAGAGATACCAGTTATTGCAGCTGGAGGAATTGTGGATGCTCGGGGTTATGTTGCTGCTCTAGCACTTGGTGCTCAAGGCGTCTGTCTAGGCACTAGGTTTTTGGCTACTGAGGAAAGCAATGCTCATCCTACATACAAAAGGAAGTTACTTGAACTTGATGAAACTGCGTACACGGATGTATTTGGGAGGGCAAGATGGCCTGGCGCCCCTCAGCGTGTCTTGCAGACACCTTTCTATAAGGAATGGAGATCCCTTCCGCCACATGAAAGTGAAGCCAACAAGCCTGTCATTGGCCATTCAACAATTAATGGCGTGGATAAAGAGATACGGCGTTTTGCAGGTACCGTCCCAAACAAGACAACTACTGGAGATCTTGAGAGCATGGTGATGTATGCTGGCCAAGGTGTTGGTCTCATCAAGGAAATTCTGCCTGCTGGTGAAGTGGTAAAGAGGCTAGTTGAAGGGGCACAGCTTATAATGCAGCAAAACTTTAAATAG

Predicted protein sequences of Glyma08g18990

Limit To All Plant Sequences

>Glyma08g18990.2   sequence type=predicted peptide   gene model=Glyma08g18990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGWRGILGFEYGIVQAPLGPDISAPPLVAAVANAGALGLLRAPDWESPDYLRELIKTTRTLTDKPFGVGVVLAFPFEENLNVILEEKVAVLQVYWGDCTRELVNKAHSAGIKVVPQVGNIEGAKQAIEAGADGIIVQGLEAGGHVIGQDGLITLVPRVVDLVGDREIPVIAAGGIVDARGYVAALALGAQGVCLGTRFLATEESNAHPTYKRKLLELDETAYTDVFGRARWPGAPQRVLQTPFYKEWRSLPPHESEANKPVIGHSTINGVDKEIRRFAGTVPNKTTTGDLESMVMYAGQGVGLIKEILPAGEVVKRLVEGAQLIMQQNFK*

>Glyma08g18990.3   sequence type=predicted peptide   gene model=Glyma08g18990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGWRGILGFEYGIVQAPLGPDISAPPLVAAVANAGALGLLRAPDWESPDYLRELIKTTRTLTDKPFGVGVVLAFPFEENLNVILEEKVAVLQVYWGDCTRELVNKAHSAGIKVVPQVGNIEGAKQAIEAGADGIIVQGLEAGGHVIGQDGLITLVPRVVDLVGDREIPVIAAGGIVDARGYVAALALGAQGVCLGTRFLATEESNAHPTYKRKLLELDETAYTDVFGRARWPGAPQRVLQTPFYKEWRSLPPHESEANKPVIGHSTINGVDKEIRRFAGTVPNKTTTGDLESMVMYAGQGVGLIKEILPAGEVVKRLVEGAQLIMQQNFK*

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