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Report for Sequence Feature Glyma08g18955

Feature Type:gene_model
Chromosome:Gm08
Start:14311264
stop:14313823
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g18955
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G25480AT Annotation by Michelle Graham. TAIR10: DNA methyltransferase-2 | chr5:8870069-8872199 REVERSE LENGTH=383 SoyBaseE_val: 3.00E-62ISS
GO:0006306GO-bp Annotation by Michelle Graham. GO Biological Process: DNA methylation SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
PTHR10629Panther MODIFICATION METHYLASE JGI ISS
PTHR10629:SF8Panther DNA (CYTOSINE-5)-METHYLTRANSFERASE 2 JGI ISS
PF00145PFAM C-5 cytosine-specific DNA methylase JGI ISS
UniRef100_G7IPK4UniRef Annotation by Michelle Graham. Most informative UniRef hit: tRNA (Cytosine-5-)-methyltransferase n=1 Tax=Medicago truncatula RepID=G7IPK4_MEDTR SoyBaseE_val: 7.00E-106ISS
UniRef100_UPI0002338FC1UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002338FC1 related cluster n=1 Tax=unknown RepID=UPI0002338FC1 SoyBaseE_val: 4.00E-140ISS

Expression Patterns of Glyma08g18955
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g18955 not represented in the dataset
Glyma08g18955 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g18955
ParalogEvidenceComments
Glyma15g06040 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g18955 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g177800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g18955
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma08g18955
>Glyma08g18955.2   sequence type=transcript   gene model=Glyma08g18955   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAACAAACCCTATTTTTCATTTTATCTTCTTGTGAGCCTAGGTTCTTTTTGAACCCGCTAGGGTTGGCCTAGTGGTGAGAGGTTTGAGTAGTTTGCAAAAGGTCTTTAGGATCAAGCCTTGTTTCAGCCATTGTTGTACACAAAAAGGAAGTCTAGGTTTTTTTTCGAGCTTGGCACTTTGGCTTTGCCATCACTGTCAAAATCAAACTAGATGAATCTGGGCTTTAGGTTACTGAGACATACAGATAAAGTATGAGATGATCAGGCTTAGCGTGATTTACATGTGTTGGTTGACTTAGGAAAATATTAAATGTCTGACTGCTGCTGATCTGGACAAGTATGGTGCGGATGCATGGCTTCTTTCTCCTCCTTGCCAACCTTACACGCGACAAGATTCTTGAGCTCATGCCATTTTTATTGCGGCCTCCAAGTATGTTATTTGTGGAAAATGTTGTTGGATTTGAGACATCTGATACACATGCAAAACTGATTGAAATATTGGAAAAAACAAATTTTATCACACAGGAGTTCATTCTGACCCCTTTACAGTTTGGAATCCCATATTCCAGGCCTCGTTATTTTTGCCTGGCTAAGAGAAAACCTTCATCTTTTGTTAATGAATGTCTGAACAACCTGCTGATTCAATCTTCACCGCCATTATTTGGGCATTTTGATACAGTGGCTGATGATGACAATTCATCAAAAGAGGACAGGCAAAACTTGTTGCAGTCATGTCAGCCTATTGAGAAATTTATTGAATTGAAGAACCTTAGCAATGATATAGCTGTTGAATCTGAAGCTTTAAGGACTGATTTATCTAATGATGCTCCTAGAACTTTGGGGGAAAATAATGGTCATGAATATGAATCTTTGGACCAGTATTACATTCACCCAAGCTTGATAGACCGGTGGGGAAGTGCAATGGATGTTGTCTATCCCATAGTTGTCAATAGCGACCGTAGTTGCTACTATAGCGGCGGGGCGGAGCGGAGCGGCACCCGTCCATGACGGACACGTGTGGAGCGGTGCGGGTTGCGGAGCTGTTTTTCGCGCCGTTACTTCGAAGCACTAGAGGTTCTGTTCTGTGTTGCTTCGTCTGCTTTGTTCTTCCAGAGAGAAAGAGGAGGGAAGAGAGAGGGAGGGAGGGAGTGCGCAGTTTTAATATACCATTAGGGGATTCAGGAAAAAAACATATATACCACTAGGGTTGGCTTACGTAAAGGCAAACAATATTAATATATAATAATAATGTTAATAATTAAATAATATAGAAATAATATTAAATAAATATAATAATATCATAATTTTATAATATTAAAA

>Glyma08g18955.3   sequence type=transcript   gene model=Glyma08g18955   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAACAAACCCTATTTTTCATTTTATCTTCTTGTGAGCCTAGGTTCTTTTTGAACCCGCTAGGGTTGGCCTAGTGGTGAGAGGTTTGAGTAGTTTGCAAAAGGTCTTTAGGATCAAGCCTTGTTTCAGCCATTGTTGTACACAAAAAGGAAGTCTAGGTTTTTTTTCGAGCTTGGCACTTTGGCTTTGCCATCACTGTCAAAATCAAACTAGATGAATCTGGGCTTTAGGTTACTGAGACATACAGATAAAGTATGAGATGATCAGGCTTAGCGTGATTTACATGTGTTGGTTGACTTAGGAAAATATTAAATGTCTGACTGCTGCTGATCTGGACAAGTATGGTGCGGATGCATGGCTTCTTTCTCCTCCTTGCCAACCTTACACGCGACAAGGTCTCCAGAAGGACACTGGTGATGCTCGAGCATTTTCTTTTCTTCAGATTCTTGAGCTCATGCCATTTTTATTGCGGCCTCCAAGTATGTTATTTGTGGAAAATGTTGTTGGATTTGAGACATCTGATACACATGCAAAACTGATTGAAATATTGGAAAAAACAAATTTTATCACACAGGAGTTCATTCTGACCCCTTTACAGTTTGGAATCCCATATTCCAGGCCTCGTTATTTTTGCCTGGCTAAGAGAAAACCTTCATCTTTTGTTAATGAATGTCTGAACAACCTGCTGATTCAATCTTCACCGCCATTATTTGGGCATTTTGATACAGTGGCTGATGATGACAATTCATCAAAAGAGGACAGGCAAAACTTGTTGCAGTCATGTCAGCCTATTGAGAAATTTATTGAATTGAAGAACCTTAGCAATGATATAGCTGTTGAATCTGAAGCTTTAAGGACTGATTTATCTAATGATGCTCCTAGAACTTTGGGGGAAAATAATGGTCATGAATATGAATCTTTGGACCAGTATTACATTCACCCAAGCTTGATAGACCGGTGGGGAAGTGCAATGGATGTTGTCTATCCCATAGTTGTCAATAGCGACCGTAGTTGCTACTATAGCGGCGGGGCGGAGCGGAGCGGCACCCGTCCATGACGGACACGTGTGGAGCGGTGCGGGTTGCGGAGCTGTTTTTCGCGCCGTTACTTCGAAGCACTAGAGGTTCTGTTCTGTGTTGCTTCGTCTGCTTTGTTCTTCCAGAGAGAAAGAGGAGGGAAGAGAGAGGGAGGGAGGGAGTGCGCAGTTTTAATATACCATTAGGGGATTCAGGAAAAAAACATATATACCACTAGGGTTGGCTTACGTAAAGGCAAACAATATTAATATATAATAATAATGTTAATAATTAAATAATATAGAAATAATATTAAATAAATATAATAATATCATAATTTTATAATATTAAAA
Coding sequences of Glyma08g18955
>Glyma08g18955.1   sequence type=CDS   gene model=Glyma08g18955   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGCGGATGCATGGCTTCTTTCTCCTCCTTGCCAACCTTACACGCGACAAGAAGGACACTGGTGATGCTCGAGCATTTTCTTTTCTTCAGATTCTTGAGCTCATGCCATTTTTATTGCGGCCTCCAAGTATGTTATTTGTGGAAAATGTTGTTGGATTTGAGACATCTGATACACATGCAAAACTGATTGAAATATTGGAAAAAACAAATTTTATCACACAGGAGTTCATTCTGACCCCTTTACAGTTTGGAATCCCATATTCCAGGCCTCGTTATTTTTGCCTGGCTAAGAGAAAACCTTCATCTTTTGTTAATGAATGTCTGAACAACCTGCTGATTCAATCTTCACCGCCATTATTTGGGCATTTTGATACAGTGGCTGATGATGACAATTCATCAAAAGAGGACAGGCAAAACTTGTTGCAGTCATGTCAGCCTATTGAGAAATTTATTGAATTGAAGAACCTTAGCAATGATATAGCTGTTGAATCTGAAGCTTTAAGGACTGATTTATCTAATGATGCTCCTAGAACTTTGGGGGAAAATAATGGTCATGAATATGAATCTTTGGACCAGTATTACATTCACCCAAGCTTGATAGACCGGTGGGGAAGTGCAATGGATGTTGTCTATCCCATAGTTGTCAATAGCGACCGTAGTTGCTACTATAGCGGCGGGGCGGAGCGGAGCGGCACCCGTCCATGA

>Glyma08g18955.2   sequence type=CDS   gene model=Glyma08g18955   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGCGGATGCATGGCTTCTTTCTCCTCCTTGCCAACCTTACACGCGACAAGATTCTTGAGCTCATGCCATTTTTATTGCGGCCTCCAAGTATGTTATTTGTGGAAAATGTTGTTGGATTTGAGACATCTGATACACATGCAAAACTGATTGAAATATTGGAAAAAACAAATTTTATCACACAGGAGTTCATTCTGACCCCTTTACAGTTTGGAATCCCATATTCCAGGCCTCGTTATTTTTGCCTGGCTAAGAGAAAACCTTCATCTTTTGTTAATGAATGTCTGAACAACCTGCTGATTCAATCTTCACCGCCATTATTTGGGCATTTTGATACAGTGGCTGATGATGACAATTCATCAAAAGAGGACAGGCAAAACTTGTTGCAGTCATGTCAGCCTATTGAGAAATTTATTGAATTGAAGAACCTTAGCAATGATATAGCTGTTGAATCTGAAGCTTTAAGGACTGATTTATCTAATGATGCTCCTAGAACTTTGGGGGAAAATAATGGTCATGAATATGAATCTTTGGACCAGTATTACATTCACCCAAGCTTGATAGACCGGTGGGGAAGTGCAATGGATGTTGTCTATCCCATAGTTGTCAATAGCGACCGTAGTTGCTACTATAGCGGCGGGGCGGAGCGGAGCGGCACCCGTCCATGA

>Glyma08g18955.3   sequence type=CDS   gene model=Glyma08g18955   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCATTTTTATTGCGGCCTCCAAGTATGTTATTTGTGGAAAATGTTGTTGGATTTGAGACATCTGATACACATGCAAAACTGATTGAAATATTGGAAAAAACAAATTTTATCACACAGGAGTTCATTCTGACCCCTTTACAGTTTGGAATCCCATATTCCAGGCCTCGTTATTTTTGCCTGGCTAAGAGAAAACCTTCATCTTTTGTTAATGAATGTCTGAACAACCTGCTGATTCAATCTTCACCGCCATTATTTGGGCATTTTGATACAGTGGCTGATGATGACAATTCATCAAAAGAGGACAGGCAAAACTTGTTGCAGTCATGTCAGCCTATTGAGAAATTTATTGAATTGAAGAACCTTAGCAATGATATAGCTGTTGAATCTGAAGCTTTAAGGACTGATTTATCTAATGATGCTCCTAGAACTTTGGGGGAAAATAATGGTCATGAATATGAATCTTTGGACCAGTATTACATTCACCCAAGCTTGATAGACCGGTGGGGAAGTGCAATGGATGTTGTCTATCCCATAGTTGTCAATAGCGACCGTAGTTGCTACTATAGCGGCGGGGCGGAGCGGAGCGGCACCCGTCCATGA
Predicted protein sequences of Glyma08g18955
>Glyma08g18955.1   sequence type=predicted peptide   gene model=Glyma08g18955   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVRMHGFFLLLANLTRDKKDTGDARAFSFLQILELMPFLLRPPSMLFVENVVGFETSDTHAKLIEILEKTNFITQEFILTPLQFGIPYSRPRYFCLAKRKPSSFVNECLNNLLIQSSPPLFGHFDTVADDDNSSKEDRQNLLQSCQPIEKFIELKNLSNDIAVESEALRTDLSNDAPRTLGENNGHEYESLDQYYIHPSLIDRWGSAMDVVYPIVVNSDRSCYYSGGAERSGTRP*

>Glyma08g18955.2   sequence type=predicted peptide   gene model=Glyma08g18955   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVRMHGFFLLLANLTRDKILELMPFLLRPPSMLFVENVVGFETSDTHAKLIEILEKTNFITQEFILTPLQFGIPYSRPRYFCLAKRKPSSFVNECLNNLLIQSSPPLFGHFDTVADDDNSSKEDRQNLLQSCQPIEKFIELKNLSNDIAVESEALRTDLSNDAPRTLGENNGHEYESLDQYYIHPSLIDRWGSAMDVVYPIVVNSDRSCYYSGGAERSGTRP*

>Glyma08g18955.3   sequence type=predicted peptide   gene model=Glyma08g18955   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPFLLRPPSMLFVENVVGFETSDTHAKLIEILEKTNFITQEFILTPLQFGIPYSRPRYFCLAKRKPSSFVNECLNNLLIQSSPPLFGHFDTVADDDNSSKEDRQNLLQSCQPIEKFIELKNLSNDIAVESEALRTDLSNDAPRTLGENNGHEYESLDQYYIHPSLIDRWGSAMDVVYPIVVNSDRSCYYSGGAERSGTRP*






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