Report for Sequence Feature Glyma08g18920
Feature Type: gene_model
Chromosome: Gm08
Start: 14289579
stop: 14294097
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g18920
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G12200 AT
Annotation by Michelle Graham. TAIR10: pyrimidine 2 | chr5:3941700-3944727 REVERSE LENGTH=531
SoyBase E_val: 0 ISS
GO:0006208 GO-bp
Annotation by Michelle Graham. GO Biological Process: pyrimidine nucleobase catabolic process
SoyBase N/A ISS
GO:0006212 GO-bp
Annotation by Michelle Graham. GO Biological Process: uracil catabolic process
SoyBase N/A ISS
GO:0006635 GO-bp
Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation
SoyBase N/A ISS
GO:0016558 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix
SoyBase N/A ISS
GO:0043562 GO-bp
Annotation by Michelle Graham. GO Biological Process: cellular response to nitrogen levels
SoyBase N/A ISS
GO:0005783 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum
SoyBase N/A ISS
GO:0005794 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus
SoyBase N/A ISS
GO:0012505 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: endomembrane system
SoyBase N/A ISS
GO:0004157 GO-mf
Annotation by Michelle Graham. GO Molecular Function: dihydropyrimidinase activity
SoyBase N/A ISS
GO:0016787 GO-mf
Annotation by Michelle Graham. GO Molecular Function: hydrolase activity
SoyBase N/A ISS
GO:0016810 GO-mf
Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
SoyBase N/A ISS
GO:0016812 GO-mf
Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
SoyBase N/A ISS
KOG2584
KOG
Dihydroorotase and related enzymes
JGI ISS
PTHR11647 Panther
AMINOHYDROLASE
JGI ISS
PTHR11647:SF1 Panther
STROMAL CELL-DERIVED FACTOR 2-RELATED
JGI ISS
PF01979 PFAM
Amidohydrolase family
JGI ISS
UniRef100_G7K315 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Dihydropyrimidinase n=1 Tax=Medicago truncatula RepID=G7K315_MEDTR
SoyBase E_val: 0 ISS
UniRef100_UPI00023386E0 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI00023386E0 related cluster n=1 Tax=unknown RepID=UPI00023386E0
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g18920
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma08g18920
Paralog Evidence Comments
Glyma15g06100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g18920 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g177500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g18920
Coding sequences of Glyma08g18920
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g18920.2 sequence type=CDS gene model=Glyma08g18920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
TTTTGTGACGCTGGAACTTCATCCAAGCTGTTGATCAAGGGAGGCACCGTTGTCAATGCTCACCACCAACAGGTTGCCGATGTTTATGTCGAAGATGGTATCATTGTTTCCATCAAATCCACTATTATGGTTGGAGATGAGGTGACTGTCATAGATGCCACTGGCAAGTTTGTCATGCCAGGGGGCACCGATCCTCACACCCACCTAGAGTTTGAATTTATGGGTACAGAAACTGTAGATGGCTTCTTCGGTGGTCAGGCTGCAGCATTAGCTGGTGGGACAACAATGCACATTGACTTTGTTATACCACGTAAAGGAAGTTTAACGGCTGGTATTGAAGCCTATGAAAAGAAGGCAAGGAAGTCTTGCATGGATTATGGTTTCCATATTGCTATTACCAAATGGGATGAAACCATGTCGAGAGAAATGGAGCTCATGGTCAAGGAGAAAGGTACCAACTCTTTTAAGTTTTTCATGGCATATAAAGGAGCTCTTATGATCAATGATGAGTTTCTTCTGGAAGGATTTAAAAAGTGCAAGTCTCTTGGTGCCTTAGCTATGGTCAGAAAAAAAATTATAGAACTTGGAATAACTGGTCCTGAGGGGCAAGCTCTTTCATGGCCTGCAGTGTTGGAAGGAGAGGCAACTGCTCGTGCTATTCATTTAGCTGATTTTGTGAACACTCCTTTATATGTGGTTCATGTAATGAGCATTGATGCAATGGAAGAAATTGCAAAGGCCAGGAAATCAGGACAAAGGGTAATTGGAGAGCCAGTTGCCTCTGGGTTAGCCCTTGATGAATCTTGGCTTTGGCATCCTGACTTTGAGACTGCTGCAAAGCAAGTCATGAGTCCCCCTATTAGGAAACGAGGACATGATAAGGCCCTTCAAGCTTCCCTTTCAACAGGACTGGTAGGAACTGATCGGTGTGCCTTTAATTCCACCCAGAAAGCTCTTGGAATTGATGACTTCCAGAAAATTCCTAATGGTGTCAATGGTATTGAAGAAAGGATGCATTTGGTATGGGATATCATGGTGGAATCTGTCCAAATATCTGTCACTGATTATGTCCGGTTGACAAGCACTAATGGATGCCAAAATGCTAGAATCTTCAATATATGTCCAAGGAAAGGAGCTATTCTTCCAGGATCTGATGCAGATATTATCATCCTCAACCCAAATTCAAGCTTTGAGATAACTGCAAAGTCCCACCACTCCAAACTGGACACAAATGGGAAAGTCGAAGTGACTATTGCAGGAGGAAGAGTTGTTTGGGAAAATAATGAACTGAAGGTTGCTCATGGTACTGGGAGATATATTAAAATGCCACCCTTTAGTTACCTGTCTGACGGAATTGACAAAAAAGGATGTCTTTTATCTAAATTACCTCCAAGCCCCAGTGGAGAGAGCCAAATCCAACACTTAAAAAGTTTCTGA
Predicted protein sequences of Glyma08g18920
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g18920.2 sequence type=predicted peptide gene model=Glyma08g18920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
FCDAGTSSKLLIKGGTVVNAHHQQVADVYVEDGIIVSIKSTIMVGDEVTVIDATGKFVMPGGTDPHTHLEFEFMGTETVDGFFGGQAAALAGGTTMHIDFVIPRKGSLTAGIEAYEKKARKSCMDYGFHIAITKWDETMSREMELMVKEKGTNSFKFFMAYKGALMINDEFLLEGFKKCKSLGALAMVRKKIIELGITGPEGQALSWPAVLEGEATARAIHLADFVNTPLYVVHVMSIDAMEEIAKARKSGQRVIGEPVASGLALDESWLWHPDFETAAKQVMSPPIRKRGHDKALQASLSTGLVGTDRCAFNSTQKALGIDDFQKIPNGVNGIEERMHLVWDIMVESVQISVTDYVRLTSTNGCQNARIFNICPRKGAILPGSDADIIILNPNSSFEITAKSHHSKLDTNGKVEVTIAGGRVVWENNELKVAHGTGRYIKMPPFSYLSDGIDKKGCLLSKLPPSPSGESQIQHLKSF*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
