Report for Sequence Feature Glyma08g18850
Feature Type: gene_model
Chromosome: Gm08
Start: 14245326
stop: 14249676
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g18850
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G51220 AT
Annotation by Michelle Graham. TAIR10: ubiquinol-cytochrome C chaperone family protein | chr5:20821405-20823125 REVERSE LENGTH=281
SoyBase E_val: 1.00E-131 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
KOG2873
KOG
Ubiquinol cytochrome c reductase assembly protein CBP3
JGI ISS
PTHR12184 Panther
BASIC FGF-REPRESSED ZIC BINDING PROTEIN HOMOLOG (ZIC3-BINDING PROTEIN)
JGI ISS
PF03981 PFAM
Ubiquinol-cytochrome C chaperone
JGI ISS
UniRef100_G7IPM1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Ubiquinol-cytochrome c reductase complex chaperone CBP3-like protein n=1 Tax=Medicago truncatula RepID=G7IPM1_MEDTR
SoyBase E_val: 1.00E-152 ISS
UniRef100_I1KUB0 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KUB0_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g18850
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma08g18850
Paralog Evidence Comments
Glyma15g06170 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g18850 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g176800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g18850
Transcripts of Glyma08g18850
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g18850.4 sequence type=transcript gene model=Glyma08g18850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
AGTCCCAGTTAATACCAAGTCCATTTAAGTTGGGTTTCTGTTCGCCGCTGGTGTTGCCTTAGTCTGTGTTGAGACTTGAGAGTTGTGTGCATAACACAATCAATTAAGAAGCTGTGATTCTGATTCAGAATCAGAATGTTGCGAAGATGGAGCAAAGCAGTTACTCCAATCTCCAAATTTGGATCGCAGCAGAGTCATTTGAATTTCGTGAAGGACGTCACGCGCCAAAGCTACGCCGGGGTTGCACCCGCGCCAACAACGATAGAGGATAAACCTCAACCCCCCGTGGTTAAACTTGACAAAATGTTTTGGTCTAAGCCCTGTTCGCTGGCCCTGCCCCGGGACTCACCCCTCAAAGCTGAAGAACCTGATTATCAGGGCATCAAGCGTTTCATGCTCAAGCTCATGCTGTTTTATAGTAAGCAGAGCAAGTCAATTCGAGGCGCTAATGTTGTGTACCGAAGAATTGTTTCTCAAATTGATAAACCTCCCATTTATGAAGTGTTTAACTTGGAGAAAACATTCAAAACAACATTCTCTTTACTTGTACTTCATATGTGGTTATGTTTGCGTCGCTTGAAGCAAGAGGGAAATGAGGGTGTTGAATTTGGCCAGTACCTTTATGAGATTTACAATCATGATGTGGAGCTAAGAGTCTCTAAAGCTGGAGTTAACCTACTACTGACTAAGTGGATGAAAGAGCTCGAGAAGATTTTTTATGGGAACATTGTTGCTTATGATACTGCCATACTTCCAGAAGCTAAACCGGGTGATTTTTCTAATGTTATATGGAGGAATATATTCTCTGAAGATGGTTCTTCAACACCAGATGCTGCTGCATCTCAATCAGTACAGGCGATGGCCAGATATGCTCGCCGTGAAGTAAGTTGCATGACCTTAACAGATAAAGAAGCACTATATTCAGGGAATTTTATGTTCACCTCTTTGAAGCATGAGAACAGAAGCGGAAAGGGGCCTCAATGATGAAGTGGTGATTTCTAAATTTGTGATTTAGCAAATTGAAAATACACGCTGTTCTTATTTTATTTATTTTTTACAAAAAAATTGTTGAATAATTATGACATAAAGCTCATGTCCTTCTCCGTAAGGCTTTTATTATACTTGATTAGCTTGGTGCCCAGAAACTAGAACTCTCATATTCTTGCCCTGTAAAATGAGAAAAGAAAAAGGGCAGAAGTGACTGAAAAATGTTGTTCTTTCTCATTTTTGGTCATCTGTTCCTCTTTACTTTGCTTTAACGGCTTCAATGGTTTGCCTTTGTTATTTGAGACATTACAAATTTTCAATACAATGC
Coding sequences of Glyma08g18850
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g18850.3 sequence type=CDS gene model=Glyma08g18850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTTGCGAAGATGGAGCAAAGCAGTTACTCCAATCTCCAAATTTGGATCGCAGCAGAGTCATTTGAATTTCGTGAAGGACGTCACGCGCCAAAGCTACGCCGGGGTTGCACCCGCGCCAACAACGATAGAGGATAAACCTCAACCCCCCGTGGTTAAACTTGACAAAATGTTTTGGTCTAAGCCCTGTTCGCTGGCCCTGCCCCGGGACTCACCCCTCAAAGCTGAAGAACCTGATTATCAGGGCATCAAGCGTTTCATGCTCAAGCTCATGCTGTTTTATAGTAAGCAGAGCAAGTCAATTCGAGGCGCTAATGTTGTGTACCGAAGAATTGTTTCTCAAATTGATAAACCTCCCATTTATGAAGTGTTTAACTTGGAGAAAACATTCAAAACAACATTCTCTTTACTTGTACTTCATATGTGGTTATGTTTGCGTCGCTTGAAGCAAGAGGGAAATGAGGGTGTTGAATTTGGCCAGTACCTTTATGAGATTTACAATCATGATGTGGAGCTAAGAGTCTCTAAAGCTGGAGTTAACCTACTACTGACTAAGTGGATGAAAGAGCTCGAGAAGATTTTTTATGGGAACATTGTTGCTTATGATACTGCCATACTTCCAGAAGCTAAACCGGGTGATTTTTCTAATGTTATATGGAGGAATATATTCTCTGAAGATGGTTCTTCAACACCAGATGCTGCTGCATCTCAATCAGTACAGGCGATGGCCAGATATGCTCGCCGTGAAGTAAGTTGCATGACCTTAACAGATAAAGAAGCACTATATTCAGGGAATTTTATGTTCACCTCTTTGAAGCATGAGAACAGAAGCGGAAAGGGGCCTCAATGA
>Glyma08g18850.4 sequence type=CDS gene model=Glyma08g18850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTTGCGAAGATGGAGCAAAGCAGTTACTCCAATCTCCAAATTTGGATCGCAGCAGAGTCATTTGAATTTCGTGAAGGACGTCACGCGCCAAAGCTACGCCGGGGTTGCACCCGCGCCAACAACGATAGAGGATAAACCTCAACCCCCCGTGGTTAAACTTGACAAAATGTTTTGGTCTAAGCCCTGTTCGCTGGCCCTGCCCCGGGACTCACCCCTCAAAGCTGAAGAACCTGATTATCAGGGCATCAAGCGTTTCATGCTCAAGCTCATGCTGTTTTATAGTAAGCAGAGCAAGTCAATTCGAGGCGCTAATGTTGTGTACCGAAGAATTGTTTCTCAAATTGATAAACCTCCCATTTATGAAGTGTTTAACTTGGAGAAAACATTCAAAACAACATTCTCTTTACTTGTACTTCATATGTGGTTATGTTTGCGTCGCTTGAAGCAAGAGGGAAATGAGGGTGTTGAATTTGGCCAGTACCTTTATGAGATTTACAATCATGATGTGGAGCTAAGAGTCTCTAAAGCTGGAGTTAACCTACTACTGACTAAGTGGATGAAAGAGCTCGAGAAGATTTTTTATGGGAACATTGTTGCTTATGATACTGCCATACTTCCAGAAGCTAAACCGGGTGATTTTTCTAATGTTATATGGAGGAATATATTCTCTGAAGATGGTTCTTCAACACCAGATGCTGCTGCATCTCAATCAGTACAGGCGATGGCCAGATATGCTCGCCGTGAAGTAAGTTGCATGACCTTAACAGATAAAGAAGCACTATATTCAGGGAATTTTATGTTCACCTCTTTGAAGCATGAGAACAGAAGCGGAAAGGGGCCTCAATGA
Predicted protein sequences of Glyma08g18850
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g18850.3 sequence type=predicted peptide gene model=Glyma08g18850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MLRRWSKAVTPISKFGSQQSHLNFVKDVTRQSYAGVAPAPTTIEDKPQPPVVKLDKMFWSKPCSLALPRDSPLKAEEPDYQGIKRFMLKLMLFYSKQSKSIRGANVVYRRIVSQIDKPPIYEVFNLEKTFKTTFSLLVLHMWLCLRRLKQEGNEGVEFGQYLYEIYNHDVELRVSKAGVNLLLTKWMKELEKIFYGNIVAYDTAILPEAKPGDFSNVIWRNIFSEDGSSTPDAAASQSVQAMARYARREVSCMTLTDKEALYSGNFMFTSLKHENRSGKGPQ*
>Glyma08g18850.4 sequence type=predicted peptide gene model=Glyma08g18850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MLRRWSKAVTPISKFGSQQSHLNFVKDVTRQSYAGVAPAPTTIEDKPQPPVVKLDKMFWSKPCSLALPRDSPLKAEEPDYQGIKRFMLKLMLFYSKQSKSIRGANVVYRRIVSQIDKPPIYEVFNLEKTFKTTFSLLVLHMWLCLRRLKQEGNEGVEFGQYLYEIYNHDVELRVSKAGVNLLLTKWMKELEKIFYGNIVAYDTAILPEAKPGDFSNVIWRNIFSEDGSSTPDAAASQSVQAMARYARREVSCMTLTDKEALYSGNFMFTSLKHENRSGKGPQ*