Glyma08g18810 - SoyBase

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Report for Sequence Feature Glyma08g18810

Feature Type:	gene_model
Chromosome:	Gm08
Start:	14204837
stop:	14211896
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g18810

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G14450	AT	Annotation by Michelle Graham. TAIR10: CTC-interacting domain 9 \| chr3:4849788-4851601 FORWARD LENGTH=327	SoyBase	E_val: 2.00E-150	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
KOG0148	KOG	Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily)	JGI		ISS
PTHR24011	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24011:SF187	Panther		JGI		ISS
PF00076	PFAM	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	JGI		ISS
PF07145	PFAM	Ataxin-2 C-terminal region	JGI		ISS
UniRef100_B9SVC9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RNA-binding protein, putative (Fragment) n=1 Tax=Ricinus communis RepID=B9SVC9_RICCO	SoyBase	E_val: 1.00E-153	ISS
UniRef100_C6TDF4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TDF4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g18810

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g18810

Paralog	Evidence	Comments
Glyma15g40060	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g18810 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g176400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g18810

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g18810

Limit To All Plant Sequences

>Glyma08g18810.2   sequence type=transcript   gene model=Glyma08g18810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAAAACCACACACCGCAGGCAAAGGCCAAGACAGTAGTAGCTAAAGCCAAAGCCTATGCTATTCCAAACACCACCTCTCTCTCTCTCCGCAGCTGTGTCATGATTCATTTCTAAACCCTAATTCTCCTTGTTTCCATTTCTGCTTCATTGTTTTTTAAGCAATTCCCGAGCATTGATCAAATGGGTTTTTGTTCATTTCCAATTTTCTGAAATAGCGTGCCCTCAAAAAAATATTATCTGATCACATTTTCTGCTTCTGCAAATTCTGCATTTTTTTCTTTCTTTCTTTCTTTCTGGGGTCTCTGCTGAACAAGGGAATCTCGCAGATTCTTTGTGTTTCTCTTCGGTTTTCGGTCTCAAAATTTAAGCTTTTGGACCTTTAGTGTTGCAAATTGTTGAGGGTTTTTGTGGGGTGGTGGCTTTGATTTTCCATGGCTGCGGTTGCTGAGATTCCCGCTGATGCCAACAAAATGGACTCAAAACCTAAGGCTGAATCTGAATTCAGTGTGCAGAAGCTGGTTGACATGTTCACAAAGTTGAATCCTTTGGCGAAGGAGTTTTTCCCTTCATCATATTCTCCCAATCATGATCATGGCTTTCAGGGCTTTAATCAGCTCTCACCAACCCAATTTCTGGTCAGCACTAAGCCCTCTGCTAATGAGAATTTCCTGAACAGTCGAAGGAGAAGAAATAGTTTTAACCAAGGAAGGAGAAGGGTGAGTGGAAGATCTCTAAAGGCTCAGAGAGAAGATAGCATTAGAAGAACAGTATATGTTTCTGAGATTGATCAGCATGTTACTGAGGAGCGGCTTGCTGCCTTATTCAGCAGCTGTGGACAAGTAATTGATTGCCGAATTTGTGGTGATCCACATTCAGTTCTCCGTTTTGCTTTTGTTGAGTTTGCAGATGAGTATGGTGCAAGGACTGCTCTAAATCTTGGGGGTACCGTGCTTGGATACTATCCGGTCAGGGTTCTTCCTTCAAAAACTGCCATTCTTCCGGTGAATCCTACATTCCTCCCTAGGTCGGATGATGAGCGTGAAATGTGTGCCCGGACTATCTATTGTACAAATATTGATAAAAAGGTTTCTCAAGCTGAAGTGAAGAATTTTTTTGAATCAGCTTGTGGCGAGGTTATGCGCCTTAGGCTTTTAGGGGACCAAGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGCAATGGCTGAAAGTGCCATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACCCAGCCTATAAGGTTTGGTGCCTTTACTGAAGCATAGTTTTTGTTATGCAAGTTTCAACTAAAGTTAGTTGATTCATATTTGATTTTCATTCTCATTCTGTAGGGTGAGTCCTTCAAAGACTCCAGTGAGGCCAAGGGTCCCTCGTCCGGCATCTCATTAACCGATCAACATCATCCAACAAGACTTGAGAGAGAGGATATTTGGTCAACTTTCCAGTTGAGACTTGTGTAGAAAGGGTGGTGAAACTTCCCTTTGTTTCAGTATTTCCATCTTTTTTTCTGTTAACAGCAGTTACTTTTTTTGTTGCCAGAGCTTATAACTATTATGCACTAGTTAAACTTTCTAGCATCCAGTCCTTGATCGTGAAGTATTATACCGTATCTACATTGAAATGGTCTAGTTTCAGTTTTTTTTGTTACTTGGAGCTAGTACTAATCGTACTTTAATTTAGCCTGAATCTTTTGCACTATTTACAGTCGTAAATATTTGTGAGTTCTGTATGTTTAGCATCTAATTAGGGCAAACGTTCAAATAATAAAGATTTGTAACTGTGAAGATGTGATTTTGAGTTCCCTCGAATTGTAAAGCTAGATGCACATTAAAACATGAAA

>Glyma08g18810.3   sequence type=transcript   gene model=Glyma08g18810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAAAACCACACACCGCAGGCAAAGGCCAAGACAGTAGTAGCTAAAGCCAAAGCCTATGCTATTCCAAACACCACCTCTCTCTCTCTCCGCAGCTGTGTCATGATTCATTTCTAAACCCTAATTCTCCTTGTTTCCATTTCTGCTTCATTGTTTTTTAAGCAATTCCCGAGCATTGATCAAATGGGTTTTTGTTCATTTCCAATTTTCTGAAATAGCGTGCCCTCAAAAAAATATTATCTGATCACATTTTCTGCTTCTGCAAATTCTGCATTTTTTTCTTTCTTTCTTTCTTTCTGGGGTCTCTGCTGAACAAGGGAATCTCGCAGATTCTTTGTGTTTCTCTTCGGTTTTCGGTCTCAAAATTTAAGCTTTTGGACCTTTAGTGTTGCAAATTGTTGAGGGTTTTTGTGGGGTGGTGGCTTTGATTTTCCATGGCTGCGGTTGCTGAGATTCCCGCTGATGCCAACAAAATGGACTCAAAACCTAAGGCTGAATCTGAATTCAGTGTGCAGAAGCTGGTTGACATGTTCACAAAGTTGAATCCTTTGGCGAAGGAGTTTTTCCCTTCATCATATTCTCCCAATCATGATCATGGCTTTCAGGGCTTTAATCAGCTCTCACCAACCCAATTTCTGAGAAGAAATAGTTTTAACCAAGGAAGGAGAAGGGTGAGTGGAAGATCTCTAAAGGCTCAGAGAGAAGATAGCATTAGAAGAACAGTATATGTTTCTGAGATTGATCAGCATGTTACTGAGGAGCGGCTTGCTGCCTTATTCAGCAGCTGTGGACAAGTAATTGATTGCCGAATTTGTGGTGATCCACATTCAGTTCTCCGTTTTGCTTTTGTTGAGTTTGCAGATGAGTATGGTGCAAGGACTGCTCTAAATCTTGGGGGTACCGTGCTTGGATACTATCCGGTCAGGGTTCTTCCTTCAAAAACTGCCATTCTTCCGGTGAATCCTACATTCCTCCCTAGGTCGGATGATGAGCGTGAAATGTGTGCCCGGACTATCTATTGTACAAATATTGATAAAAAGGTTTCTCAAGCTGAAGTGAAGAATTTTTTTGAATCAGCTTGTGGCGAGGTTATGCGCCTTAGGCTTTTAGGGGACCAAGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGCAATGGCTGAAAGTGCCATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACCCAGCCTATAAGGGTGAGTCCTTCAAAGACTCCAGTGAGGCCAAGGGTCCCTCGTCCGGCATCTCATTAACCGATCAACATCATCCAACAAGACTTGAGAGAGAGGATATTTGGTCAACTTTCCAGTTGAGACTTGTGTAGAAAGGGTGGTGAAACTTCCCTTTGTTTCAGTATTTCCATCTTTTTTTCTGTTAACAGCAGTTACTTTTTTTGTTGCCAGAGCTTATAACTATTATGCACTAGTTAAACTTTCTAGCATCCAGTCCTTGATCGTGAAGTATTATACCGTATCTACATTGAAATGGTCTAGTTTCAGTTTTTTTTGTTACTTGGAGCTAGTACTAATCGTACTTTAATTTAGCCTGAATCTTTTGCACTATTTACAGTCGTAAATATTTGTGAGTTCTGTATGTTTAGCATCTAATTAGGGCAAACGTTCAAATAATAAAGATTTGTAACTGTGAAGATGTGATTTTGAGTTCCCTCGAATTGTAAAGCTAGATGCACATTAAAACATGAAA

Coding sequences of Glyma08g18810

Limit To All Plant Sequences

>Glyma08g18810.1   sequence type=CDS   gene model=Glyma08g18810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCGGTTGCTGAGATTCCCGCTGATGCCAACAAAATGGACTCAAAACCTAAGGCTGAATCTGAATTCAGTGTGCAGAAGCTGGTTGACATGTTCACAAAGTTGAATCCTTTGGCGAAGGAGTTTTTCCCTTCATCATATTCTCCCAATCATGATCATGGCTTTCAGGGCTTTAATCAGCTCTCACCAACCCAATTTCTGGTCAGCACTAAGCCCTCTGCTAATGAGAATTTCCTGAACAGTCGAAGGAGAAGAAATAGTTTTAACCAAGGAAGGAGAAGGGTGAGTGGAAGATCTCTAAAGGCTCAGAGAGAAGATAGCATTAGAAGAACAGTATATGTTTCTGAGATTGATCAGCATGTTACTGAGGAGCGGCTTGCTGCCTTATTCAGCAGCTGTGGACAAGTAATTGATTGCCGAATTTGTGGTGATCCACATTCAGTTCTCCGTTTTGCTTTTGTTGAGTTTGCAGATGAGTATGGTGCAAGGACTGCTCTAAATCTTGGGGGTACCGTGCTTGGATACTATCCGGTCAGGGTTCTTCCTTCAAAAACTGCCATTCTTCCGGTGAATCCTACATTCCTCCCTAGGTCGGATGATGAGCGTGAAATGTGTGCCCGGACTATCTATTGTACAAATATTGATAAAAAGGTTTCTCAAGCTGAAGTGAAGAATTTTTTTGAATCAGCTTGTGGCGAGGTTATGCGCCTTAGGCTTTTAGGGGACCAAGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGCAATGGCTGAAAGTGCCATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACCCAGCCTATAAGGGTGAGTCCTTCAAAGACTCCAGTGAGGCCAAGGGTCCCTCGTCCGGCATCTCATTAA

>Glyma08g18810.2   sequence type=CDS   gene model=Glyma08g18810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCGGTTGCTGAGATTCCCGCTGATGCCAACAAAATGGACTCAAAACCTAAGGCTGAATCTGAATTCAGTGTGCAGAAGCTGGTTGACATGTTCACAAAGTTGAATCCTTTGGCGAAGGAGTTTTTCCCTTCATCATATTCTCCCAATCATGATCATGGCTTTCAGGGCTTTAATCAGCTCTCACCAACCCAATTTCTGGTCAGCACTAAGCCCTCTGCTAATGAGAATTTCCTGAACAGTCGAAGGAGAAGAAATAGTTTTAACCAAGGAAGGAGAAGGGTGAGTGGAAGATCTCTAAAGGCTCAGAGAGAAGATAGCATTAGAAGAACAGTATATGTTTCTGAGATTGATCAGCATGTTACTGAGGAGCGGCTTGCTGCCTTATTCAGCAGCTGTGGACAAGTAATTGATTGCCGAATTTGTGGTGATCCACATTCAGTTCTCCGTTTTGCTTTTGTTGAGTTTGCAGATGAGTATGGTGCAAGGACTGCTCTAAATCTTGGGGGTACCGTGCTTGGATACTATCCGGTCAGGGTTCTTCCTTCAAAAACTGCCATTCTTCCGGTGAATCCTACATTCCTCCCTAGGTCGGATGATGAGCGTGAAATGTGTGCCCGGACTATCTATTGTACAAATATTGATAAAAAGGTTTCTCAAGCTGAAGTGAAGAATTTTTTTGAATCAGCTTGTGGCGAGGTTATGCGCCTTAGGCTTTTAGGGGACCAAGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGCAATGGCTGAAAGTGCCATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACCCAGCCTATAAGGTTTGGTGCCTTTACTGAAGCATAG

>Glyma08g18810.3   sequence type=CDS   gene model=Glyma08g18810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCGGTTGCTGAGATTCCCGCTGATGCCAACAAAATGGACTCAAAACCTAAGGCTGAATCTGAATTCAGTGTGCAGAAGCTGGTTGACATGTTCACAAAGTTGAATCCTTTGGCGAAGGAGTTTTTCCCTTCATCATATTCTCCCAATCATGATCATGGCTTTCAGGGCTTTAATCAGCTCTCACCAACCCAATTTCTGAGAAGAAATAGTTTTAACCAAGGAAGGAGAAGGGTGAGTGGAAGATCTCTAAAGGCTCAGAGAGAAGATAGCATTAGAAGAACAGTATATGTTTCTGAGATTGATCAGCATGTTACTGAGGAGCGGCTTGCTGCCTTATTCAGCAGCTGTGGACAAGTAATTGATTGCCGAATTTGTGGTGATCCACATTCAGTTCTCCGTTTTGCTTTTGTTGAGTTTGCAGATGAGTATGGTGCAAGGACTGCTCTAAATCTTGGGGGTACCGTGCTTGGATACTATCCGGTCAGGGTTCTTCCTTCAAAAACTGCCATTCTTCCGGTGAATCCTACATTCCTCCCTAGGTCGGATGATGAGCGTGAAATGTGTGCCCGGACTATCTATTGTACAAATATTGATAAAAAGGTTTCTCAAGCTGAAGTGAAGAATTTTTTTGAATCAGCTTGTGGCGAGGTTATGCGCCTTAGGCTTTTAGGGGACCAAGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGCAATGGCTGAAAGTGCCATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACCCAGCCTATAAGGGTGAGTCCTTCAAAGACTCCAGTGAGGCCAAGGGTCCCTCGTCCGGCATCTCATTAA

Predicted protein sequences of Glyma08g18810

Limit To All Plant Sequences

>Glyma08g18810.1   sequence type=predicted peptide   gene model=Glyma08g18810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAVAEIPADANKMDSKPKAESEFSVQKLVDMFTKLNPLAKEFFPSSYSPNHDHGFQGFNQLSPTQFLVSTKPSANENFLNSRRRRNSFNQGRRRVSGRSLKAQREDSIRRTVYVSEIDQHVTEERLAALFSSCGQVIDCRICGDPHSVLRFAFVEFADEYGARTALNLGGTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCARTIYCTNIDKKVSQAEVKNFFESACGEVMRLRLLGDQVHSTRIAFVEFAMAESAIIALNCSGMLLGTQPIRVSPSKTPVRPRVPRPASH*

>Glyma08g18810.2   sequence type=predicted peptide   gene model=Glyma08g18810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAVAEIPADANKMDSKPKAESEFSVQKLVDMFTKLNPLAKEFFPSSYSPNHDHGFQGFNQLSPTQFLVSTKPSANENFLNSRRRRNSFNQGRRRVSGRSLKAQREDSIRRTVYVSEIDQHVTEERLAALFSSCGQVIDCRICGDPHSVLRFAFVEFADEYGARTALNLGGTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCARTIYCTNIDKKVSQAEVKNFFESACGEVMRLRLLGDQVHSTRIAFVEFAMAESAIIALNCSGMLLGTQPIRFGAFTEA*

>Glyma08g18810.3   sequence type=predicted peptide   gene model=Glyma08g18810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAVAEIPADANKMDSKPKAESEFSVQKLVDMFTKLNPLAKEFFPSSYSPNHDHGFQGFNQLSPTQFLRRNSFNQGRRRVSGRSLKAQREDSIRRTVYVSEIDQHVTEERLAALFSSCGQVIDCRICGDPHSVLRFAFVEFADEYGARTALNLGGTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCARTIYCTNIDKKVSQAEVKNFFESACGEVMRLRLLGDQVHSTRIAFVEFAMAESAIIALNCSGMLLGTQPIRVSPSKTPVRPRVPRPASH*

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