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Report for Sequence Feature Glyma08g18801

Feature Type:gene_model
Chromosome:Gm08
Start:14154786
stop:14157329
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g18801
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G14440AT Annotation by Michelle Graham. TAIR10: nine-cis-epoxycarotenoid dioxygenase 3 | chr3:4831678-4833477 REVERSE LENGTH=599 SoyBaseE_val: 2.00E-74ISS
GO:0006970GO-bp Annotation by Michelle Graham. GO Biological Process: response to osmotic stress SoyBaseN/AISS
GO:0009409GO-bp Annotation by Michelle Graham. GO Biological Process: response to cold SoyBaseN/AISS
GO:0009414GO-bp Annotation by Michelle Graham. GO Biological Process: response to water deprivation SoyBaseN/AISS
GO:0009688GO-bp Annotation by Michelle Graham. GO Biological Process: abscisic acid biosynthetic process SoyBaseN/AISS
GO:0009737GO-bp Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus SoyBaseN/AISS
GO:0042538GO-bp Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009535GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0045549GO-mf Annotation by Michelle Graham. GO Molecular Function: 9-cis-epoxycarotenoid dioxygenase activity SoyBaseN/AISS
KOG1285 KOG Beta, beta-carotene 15,15'-dioxygenase and related enzymes JGI ISS
PTHR10543Panther CARTENOID OXYGENASE JGI ISS
PTHR10543:SF1Panther 9-CIS-EPOXYCAROTENOID DIOXYGENASE-RELATED JGI ISS
PF03055PFAM Retinal pigment epithelial membrane protein JGI ISS
UniRef100_I1KUA3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KUA3_SOYBN SoyBaseE_val: 1.00E-139ISS
UniRef100_Q9M6E8UniRef Annotation by Michelle Graham. Most informative UniRef hit: 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic n=1 Tax=Phaseolus vulgaris RepID=NCED1_PHAVU SoyBaseE_val: 2.00E-107ISS

Expression Patterns of Glyma08g18801
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g18801 not represented in the dataset
Glyma08g18801 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g18801 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g176300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g18801
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g18801
>Glyma08g18801.1   sequence type=CDS   gene model=Glyma08g18801   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGTTGAAGTTAGACTTGGTAATCCATAAACGTGCAAGAGATGAAGAAAAAAAGAAAGAAGAAGGGAGTGAGGTGGGGCAAGCGTGTGGGGAAATGGGATGTGGAGTGACCAAAGATTTGAAGGAGAAGAGAAAATTGGCCACGTTTCCTTCCTATCCTAATTCCAATTCCAATTCCAACACCATCACATGTTCCCTTCAAACACTCCACTTCCCCAAAAAGTACCAACCAACCTCCACAACCACAACAACAAAAACAACAACCACCACCACCACCACCACCACCAGCCCAGCAAGAGAAACCAAACCAGTAATCACTTCTCCCTCCGAAACAAAACACCCATTACCTCAAAAATGGAACTTTCTCCAGAAAGCAGCAGCTTCAGCCTTAGACATGGTCGAAACAGCCTTGGTCTCCCACGAGCGGCAACACCCACTCCCCAAAACCGCCGACCCGCGTGTCCAAATCGCTGGCAACTTCGCCCCCGTGCCGGAGCACCCGGCGCATCAGTCCCTCCCGGTGACCGGAAAAATCCCCAAATGCATTGAGGGCGTCTACGTCCGCAACGGCGCGAACCCACTCTACGAGCCCGTCGCTGGGCACCACTTCTTCGACGGCGACGGCATGCCATCGGTGAAACTCCACGGCCACTCCGGCATCGCCCGCCTCCTCCTCTTCTACGCCCGCTCCCTCTTCGGCCTCGTCGATGGGTCCCACGGCATGGGTGTCGCCAACGCCGGCCTCGTCTACTTCAACAACCATCTCTTAGCCATGTCCGAAGATGACTTACCCTACCATCTCCGCATAACACCCAACGGCGACTTAACCACCGTCGGCCATGCTACCGAGTGCTTCTGTTTCCACCTCTGGAACGCAGAGTTGAAGAGCATCTTGTCGGAGATAAGGCTGAATTTGAAGACAGGCAAGTCCACGAGAAAACCCATTATCTCGGAATCCGAACAAGTCAACTTGGAAGCCGGGATGGTCAACAGAAACAAGCTCGGGAGAAAGACGAAGTTCGGGTACTTAGCACTTGCGGAGCCGTGGCCTAAGGTTTCGGGTTTTGCCAAGGTTGATTTGTTCAGTGGGGAGGTTAAGAAGTACATGTATGGCGAAGAGAGGTTCGGAGGGGAGCCTCTGTTTCTTCCAAATGGTGTCGACGGTGATGAAGACGATGGCCATATTCTCGCATTCGTGCATGATGAGAAGGAGTGGAAATCGGAGCTGCAGATTGTCAATGCCAAAACTTTGAAGCTTGAGGCTTCAGTTAAGCTTCCTTCCAGAGTTCCTTATGGGTTTCACGGTACTTTTATTCATTCCAAGGATTTGAGGAAACAAGCTTGA
Predicted protein sequences of Glyma08g18801
>Glyma08g18801.1   sequence type=predicted peptide   gene model=Glyma08g18801   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKLKLDLVIHKRARDEEKKKEEGSEVGQACGEMGCGVTKDLKEKRKLATFPSYPNSNSNSNTITCSLQTLHFPKKYQPTSTTTTTKTTTTTTTTTTSPARETKPVITSPSETKHPLPQKWNFLQKAAASALDMVETALVSHERQHPLPKTADPRVQIAGNFAPVPEHPAHQSLPVTGKIPKCIEGVYVRNGANPLYEPVAGHHFFDGDGMPSVKLHGHSGIARLLLFYARSLFGLVDGSHGMGVANAGLVYFNNHLLAMSEDDLPYHLRITPNGDLTTVGHATECFCFHLWNAELKSILSEIRLNLKTGKSTRKPIISESEQVNLEAGMVNRNKLGRKTKFGYLALAEPWPKVSGFAKVDLFSGEVKKYMYGEERFGGEPLFLPNGVDGDEDDGHILAFVHDEKEWKSELQIVNAKTLKLEASVKLPSRVPYGFHGTFIHSKDLRKQA*






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