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Report for Sequence Feature Glyma08g18791

Feature Type:gene_model
Chromosome:Gm08
Start:14129281
stop:14131731
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g18791
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G60900AT Annotation by Michelle Graham. TAIR10: receptor-like protein kinase 1 | chr5:24498467-24501494 REVERSE LENGTH=748 SoyBaseE_val: 0ISS
GO:0000165GO-bp Annotation by Michelle Graham. GO Biological Process: MAPK cascade SoyBaseN/AISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0006612GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane SoyBaseN/AISS
GO:0009617GO-bp Annotation by Michelle Graham. GO Biological Process: response to bacterium SoyBaseN/AISS
GO:0009862GO-bp Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway SoyBaseN/AISS
GO:0009867GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway SoyBaseN/AISS
GO:0010310GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process SoyBaseN/AISS
GO:0010363GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response SoyBaseN/AISS
GO:0031348GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response SoyBaseN/AISS
GO:0035304GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of protein dephosphorylation SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0004713GO-mf Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016301GO-mf Annotation by Michelle Graham. GO Molecular Function: kinase activity SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
GO:0030246GO-mf Annotation by Michelle Graham. GO Molecular Function: carbohydrate binding SoyBaseN/AISS
KOG1187 KOG Serine/threonine protein kinase JGI ISS
PTHR24420Panther FAMILY NOT NAMED JGI ISS
PTHR24420:SF815Panther JGI ISS
PF00954PFAM S-locus glycoprotein family JGI ISS
PF01453PFAM D-mannose binding lectin JGI ISS
PF07714PFAM Protein tyrosine kinase JGI ISS
UniRef100_G7LEB5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Kinase-like protein n=1 Tax=Medicago truncatula RepID=G7LEB5_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI0002338FBFUniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002338FBF related cluster n=1 Tax=unknown RepID=UPI0002338FBF SoyBaseE_val: 0ISS

Expression Patterns of Glyma08g18791
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g18791 not represented in the dataset
Glyma08g18791 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g18791
ParalogEvidenceComments
Glyma15g40080 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g18791 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g176200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g18791
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g18791
>Glyma08g18791.1   sequence type=CDS   gene model=Glyma08g18791   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCCACTTTGCTTCCCTTTCTATTCCTCTCAATGGTTCTGTTACCCTTTCAAACCATAGCCCAAACCAAAAGCAACATAGCCATTGGTGAGTCTCACACAGCAGGAGCCAGCACCTCCCCATGGCTGGTTTCATCACCTTCTGGTGACTTTGCCTTTGGGTTCCTCCCACTTGAGGACACTCCTGATCACTTCATGCTTTGCATTTGGTATGCCAAGATTCAAGACAAAACCATAGTATGGTTTGCCAACAGAGACCAGCCTGCACCAAAGGGCTCAAAAGTGGTGCTCACTGCTGATGATGGGTTGGTGCTCATCACGGCCCCAAATGGTCACATGTTATGGAAGACTGGTGGACTCACTTTGAGAGTTTCTAGTGGTGTCTTAAATGACACTGGCAACTTTGTGCTTCAGGATGGTCACTCCAAGACTGTTTGGGAGAGTTTCAAGGACTATAGAGACACCTTGCTGCCATATCAGACTATGGAAAAGGGTCATAAGCTTTCTTCTAAACTTGGGAGGAATTACTTCAACAAGGGAAGGTTTGTGCTCTTTTTCCAAAATGATGGTAGCCTTGTGATGCACTCTATAAACATGCCATCTGGGTATGCTAATGAAAACTACTATCAAAGTGGAACAATTGAGTCCAACACCAACACATCAACAAGTGCTGGGACTCAATTGGTGTTTGATGGGACAGGAGACATGTATGTTTTGAGAAAAAACAATGAGAAATACAACTTGTCAAAAGGGGGTAGTAGAGCTTCTTCTACCACTCAATTTTATTACCTTAGAGCAACTCTTGATTTTGATGGGGTGTTCACACTCTATCAACATCCAAAGGGTTCTTCTGGAAGTGGAGGTTGGAGCCAAGTGTGGTCTCATCCAGATAATATCTGTAAGGATTATGTTGCTAGTGCTGGTAGTGGTGTTTGTGGATATAATAGCATTTGCAGTTTAAGAGATGATAAGAGGCCAAATTGTCGGTGCCCAAAATGGTACTCGCTGGTTGACCCTAATGATCCCAATGGTAGCTGCAAACCAGATTTTGTACAAGCATGTGCAGTAGATAAGCTTAGTAATAGACAGGATCTCTATGATTTTGAGGTGTTGATAGATACTGATTGGCCTCAATCAGATTATGTGCTTCAAAGACCATTCAATGAAGAACAATGCAGACAATCTTGTATGGAAGATTGTATGTGTTCTGTTGCAATTTTCAGGCTAGGTGATAGCTGCTGGAAGAAGAAGTTGCCACTTTCAAATGGTAGAGTTGATGCCACACTTAATGGTGCAAAGGCCTTCATGAAAGTGAGGAAAGACAACTCCTCCTTGATTGTTCCTCCAATCATTGTGAACAAGAATAATAAGAACACTTCGATTTTAGTTGGCTCAGTGCTTTTGGGTAGTTCTGCTTTTCTCAATCTCATATTGGTTGGAGCAATCTGCTTGAGCACTTCCTATGTTTTTCGGTACAAGAAGAAGCTTAGAAGTATTGGCAGAAGTGACACCATTGTGGAAACCAACTTGCGTCGCTTCACTTATGAGGAACTCAAAAAAGCCACCAATGACTTTGACAAAGTGCTAGGAAAGGGAGCTTTTGGTATTGTGTATGAAGGAGTCATCAACATGTGTTCTGATACTCGTGTAGCGGTAAAAAGGTTAAACACTTTTCTCATGGAAGATGTTCATAAGGAATTCAAGAATGAACTGAATGCCATTGGCCTCACACACCATAAGAACTTGGTCCGTTTACTTGGATTTTGCGAGACTGAAGAAAAAAGGTTGTTGGTTTATGAGTATATGAGTAATGGCACTTTAGCAAGTCTTCTTTTCAATATTGTGGAGAAACCAAGTTGGAAACTGAGGCTACAAATTGCAATTGGGATTGCTAGAGGACTTCTATATTTGCATGAAGAGTGCAGCACACAGATCATTCATTGTGACATAAAGCCTCAAAACATACTCCTTGATGATTACTATAATGCAAGGATTTCGGACTTTGGATTGGCCAAGCTTTTGAACATGAACCAAAGCAGAACCAATACTGCCATAAGAGGAACAAAAGGGTATGTTGCACTTGAATGGTTCAAAAACATGCCGATCACAGCTAAAGTGGATGTCTATAGTTATGGGGTGTTGTTGCTTGAGATAGTTTCATGTAGAAAAAGTGTAGAATTCGAGGCAGAAGATGAAGAGAAAGCAATCCTAGCTGAATGGGCTTATGACTGCTACATTGAAGGAACTCTTCATGCCCTAGTTGAGGGTGACAAAGAGGCATTGGATGACATGAAGACCTTCGAGAAATTGGTAATGATTGCCCTTTGGTGTGTGCAAGAGGATCCTAGTCTTAGACCAACTATGAGAAATGTGACACAGATGCTTGAAGGTGTTGTTGAAGTGAAAATGCCACCATGCCCCTCACAATTTAGTGTTCAATATTCCTAA
Predicted protein sequences of Glyma08g18791
>Glyma08g18791.1   sequence type=predicted peptide   gene model=Glyma08g18791   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASTLLPFLFLSMVLLPFQTIAQTKSNIAIGESHTAGASTSPWLVSSPSGDFAFGFLPLEDTPDHFMLCIWYAKIQDKTIVWFANRDQPAPKGSKVVLTADDGLVLITAPNGHMLWKTGGLTLRVSSGVLNDTGNFVLQDGHSKTVWESFKDYRDTLLPYQTMEKGHKLSSKLGRNYFNKGRFVLFFQNDGSLVMHSINMPSGYANENYYQSGTIESNTNTSTSAGTQLVFDGTGDMYVLRKNNEKYNLSKGGSRASSTTQFYYLRATLDFDGVFTLYQHPKGSSGSGGWSQVWSHPDNICKDYVASAGSGVCGYNSICSLRDDKRPNCRCPKWYSLVDPNDPNGSCKPDFVQACAVDKLSNRQDLYDFEVLIDTDWPQSDYVLQRPFNEEQCRQSCMEDCMCSVAIFRLGDSCWKKKLPLSNGRVDATLNGAKAFMKVRKDNSSLIVPPIIVNKNNKNTSILVGSVLLGSSAFLNLILVGAICLSTSYVFRYKKKLRSIGRSDTIVETNLRRFTYEELKKATNDFDKVLGKGAFGIVYEGVINMCSDTRVAVKRLNTFLMEDVHKEFKNELNAIGLTHHKNLVRLLGFCETEEKRLLVYEYMSNGTLASLLFNIVEKPSWKLRLQIAIGIARGLLYLHEECSTQIIHCDIKPQNILLDDYYNARISDFGLAKLLNMNQSRTNTAIRGTKGYVALEWFKNMPITAKVDVYSYGVLLLEIVSCRKSVEFEAEDEEKAILAEWAYDCYIEGTLHALVEGDKEALDDMKTFEKLVMIALWCVQEDPSLRPTMRNVTQMLEGVVEVKMPPCPSQFSVQYS*






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