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Report for Sequence Feature Glyma08g18781

Feature Type:gene_model
Chromosome:Gm08
Start:14123190
stop:14127949
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g18781
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G80245AT Annotation by Michelle Graham. TAIR10: Spc97 / Spc98 family of spindle pole body (SBP) component | chr1:30174547-30175217 FORWARD LENGTH=127 SoyBaseE_val: 2.00E-26ISS
GO:0000226GO-bp Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization SoyBaseN/AISS
GO:0006626GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to mitochondrion SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR19302Panther GAMMA TUBULIN COMPLEX PROTEIN JGI ISS
PTHR19302:SF29Panther UNKNOWN PROTEIN JGI ISS
UniRef100_I1KU99UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KU99_SOYBN SoyBaseE_val: 5.00E-106ISS

Expression Patterns of Glyma08g18781
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g18781 not represented in the dataset
Glyma08g18781 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g18781
ParalogEvidenceComments
Glyma15g40100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g18781 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g176100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g18781
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g18781
>Glyma08g18781.1   sequence type=CDS   gene model=Glyma08g18781   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGGACAGACACATGAAGAAAAAAGTCAAAAGATTGAAAGACATGGTTGAGCCAGATAAAAATTGCGAGACTAGGGTTGAAGATGTTGCTTGGCTTTGCTCCCTTTCAGAGTCTGAGATCGACATGCTGATTAGCTTGAAATTGTTGATCATTCAGCGTGCAAAAATGATGGGTTGTAAAGAGCTGGCTAGTAAATTCAACCTTAAAATGATTCGAGCCATTGCACTTGTTTTGATGGAACATCTCAAGGCTGAGATAAAAGGTTCATCACTTATCCCCAACACGGTTGAATCTACTTCTTTTTTAGATGCTTGCAACCTATTGAAATGTAGCAATGAGGTTGATGCAAATATTGATGACCTAAGTGCAAGTCTTGGTGCTGATATTAGTGATATGCAAACTTTTCTTAGAAGTCCTCCAACATCCAAACAAAAGAAGCAGAAAGTTGGAAGCAGAGAATGA
Predicted protein sequences of Glyma08g18781
>Glyma08g18781.1   sequence type=predicted peptide   gene model=Glyma08g18781   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKDRHMKKKVKRLKDMVEPDKNCETRVEDVAWLCSLSESEIDMLISLKLLIIQRAKMMGCKELASKFNLKMIRAIALVLMEHLKAEIKGSSLIPNTVESTSFLDACNLLKCSNEVDANIDDLSASLGADISDMQTFLRSPPTSKQKKQKVGSRE*






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