Glyma08g18750 - SoyBase

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Report for Sequence Feature Glyma08g18750

Feature Type:	gene_model
Chromosome:	Gm08
Start:	14106268
stop:	14111308
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g18750

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G14420	AT	Annotation by Michelle Graham. TAIR10: Aldolase-type TIM barrel family protein \| chr3:4821804-4823899 FORWARD LENGTH=367	SoyBase	E_val: 0	ISS
GO:0042742	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to bacterium	SoyBase	N/A	ISS
GO:0050665	GO-bp	Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide biosynthetic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005777	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: peroxisome	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0022626	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome	SoyBase	N/A	ISS
GO:0048046	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: apoplast	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0008891	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glycolate oxidase activity	SoyBase	N/A	ISS
GO:0010181	GO-mf	Annotation by Michelle Graham. GO Molecular Function: FMN binding	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
KOG0538	KOG	Glycolate oxidase	JGI		ISS
PTHR10578	Panther	(S)-2-HYDROXY-ACID OXIDASE-RELATED	JGI		ISS
PF01070	PFAM	FMN-dependent dehydrogenase	JGI		ISS
UniRef100_B0M1B1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Peroxisomal glycolate oxidase n=1 Tax=Glycine max RepID=B0M1B1_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_B0M1B1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Peroxisomal glycolate oxidase n=1 Tax=Glycine max RepID=B0M1B1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g18750

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g18750 not represented in the dataset	Glyma08g18750 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g18750

Paralog	Evidence	Comments
Glyma15g40140	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g18750 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g175800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g18750

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g18750

Limit To All Plant Sequences

>Glyma08g18750.4   sequence type=transcript   gene model=Glyma08g18750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGATGATAGATGCTCCTGCCTATACTTTACATTATCTATAGGCATATATAGCCTAATCCGCTTGCACCACTTCTTCACACAAGGGCAATGGCACATGATGAGAGGGTACTATTATTCTTCTGTTTTCAGGACTCCAAACACATGAAAAAGATAGGAACAAATAAACAGTTTCTCTCATATATAGATATATATTTTTTTCTTTTTCATTATTATTTAGAGATGGAAATGATAATGGAGAAACAAAAGAGTGCTGTGAAACACACAAGGCGTTTGTGGCTGAGAAGCACCTCACTTTGTTGATGAGATTTGGTTCAAAATAATGCTCACCTCCAAAAGCTCATCCACTTCAAAAAAAATTCCAATTCTCCTTTCCTTTCATTTGCACGTATACACATTACAACAAGTTTTTTTTTTTTTTTGAGGCCCATCTAACTTTGTCTCTATTCCACCACGTATTTATCAGCCCTTGCTATTTTTCACTTCACTTCCGTTCTGTTTCTATCCCTCACTAGGAGCTCTTCTCCATTGGTTCTTCATCTGCATGCACACACTTGCATAGTTTTGGAAACCAAGAATTTTTGAAGGGTAGCATCAACAAGAAGTTCTGGAAATGGAGATCACCAATGTCAGCGAGTATGAAGCTATTGCAAAGCAGAAGTTGCCAAAGATGGTGTTTGACTACTACGCATCTGGTGCAGAGGACCAGTGGACTCTGCAGGAGAACAGAAATGCCTTTTCCAGAATTTTGTTTCGGCCACGTATTCTTATTGATGTGAGCAAGATAGACATCACAACTACTGTCCTGGGCTTCAAAATATCCATGCCAATCATGCTTGCCCCAACAGCCATGCAGAAAATGGCTCATCCTGAGGGAGAATATGCAACAGCAAGAGCTGCATCTGCTGCTGGAACAATCATGACTTTGTCTTCATGGGCTACTTCAAGTGTTGAAGAGGTAGCTTCAACAGGACCTGGCATTCGCTTTTTCCAGCTATATGTGTACAAGGACAGGAATGTGGTTGCTCAGCTTGTGAGAAGAGCTGAAAGGGCTGGATTCAAAGCCATTGCCCTTACTGTTGATACCCCAAGACTAGGACGCAGAGAAGCTGATATCAAGAACAGATTCACACTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGAAAGATGGACAAAGCTGATGACTCTGGACTTGCTTCATATGTTGCCGGTCAAATTGATCGTACTCTTAGCTGGAAGGATGTGAAGTGGCTTCAAACAATCACCAAACTGCCAATTCTGGTGAAGGGTGTGCTGACTGCTGAGGACACAAGGATAGCTGTACAAAGTGGTGCAGCTGGAATTATAGTGTCCAATCACGGAGCTAGACAACTTGATTATGTTCCAGCCACTATATCAGCCTTAGAAGAGGTTGTCAAAGCTGCTGAAGGTCGTGTTCCTGTATTTTTGGATGGTGGTGTTCGCCGCGGAACTGATGTCTTCAAGGCATTGGCACTAGGTGCCTCTGGCATATTTATTGGACGCCCAGTGGTGTTCTCCTTGGCTGCTGAAGGAGAGGCTGGTGTAAGAAATGTGCTGCGGATGCTACGTGAGGAGTTTGAGCTAACCATGGCTTTGAGTGGTTGCACCTCACTCAAGGATATCACTCGTGATCACATTGTCACTGATTGGGACCAACCACGCACTATCCCCCGCGCCTTGCCAAGATTATGAAAAACTTTTTCCAATGGGGGAAACACTTCTATATATGTTTCATGAACCTGTTCTTCTCATCCTTTCTTTTCCTTTTTGGACAACTCATTTAAACTTGTATTTGGATAACTCTATGCTTAATTTCTAAGCATTAATATGATGATACTTCTGTGGCTACTCTGCTGCTGCATTCACTCATTGTATATTATTAATTTTGAGTCCTTTATCAACTTTTTCTATGTTGTTTTTTAATTATCTTGACATTAATATAAAATATCCACTTATTTTATTGATAATT

>Glyma08g18750.5   sequence type=transcript   gene model=Glyma08g18750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGATGATAGATGCTCCTGCCTATACTTTACATTATCTATAGGCATATATAGCCTAATCCGCTTGCACCACTTCTTCACACAAGGGCAATGGCACATGATGAGAGGGTACTATTATTCTTCTGTTTTCAGGACTCCAAACACATGAAAAAGATAGGAACAAATAAACAGTTTCTCTCATATATAGATATATATTTTTTTCTTTTTCATTATTATTTAGAGATGGAAATGATAATGGAGAAACAAAAGAGTGCTGTGAAACACACAAGGCGTTTGTGGCTGAGAAGCACCTCACTTTGTTGATGAGATTTGGTTCAAAATAATGCTCACCTCCAAAAGCTCATCCACTTCAAAAAAAATTCCAATTCTCCTTTCCTTTCATTTGCACGTATACACATTACAACAAGTTTTTTTTTTTTTTTGAGGCCCATCTAACTTTGTCTCTATTCCACCACGTATTTATCAGCCCTTGCTATTTTTCACTTCACTTCCGTTCTGTTTCTATCCCTCACTAGGAGCTCTTCTCCATTGGTTCTTCATCTGCATGCACACACTTGCATAGTTTTGGAAACCAAGACTTTTTAGAAGGCTTCAGCTATGTGATGATGGGGGGAATACTATGTTGAAATATTAGAGGAAAACCACAGCATGTAGCTTTGATTTTTTATTTTTTTTTTGGCAGAGAATTTTTGAAGGGTAGCATCAACAAGAAGTTCTGGAAATGGAGATCACCAATGTCAGCGAGTATGAAGCTATTGCAAAGCAGAAGTTGCCAAAGATGGTGTTTGACTACTACGCATCTGGTGCAGAGGACCAGTGGACTCTGCAGGAGAACAGAAATGCCTTTTCCAGAATTTTGTTTCGGCCACGTATTCTTATTGATGTGAGCAAGATAGACATCACAACTACTGTCCTGGGCTTCAAAATATCCATGCCAATCATGCTTGCCCCAACAGCCATGCAGAAAATGGCTCATCCTGAGGGAGAATATGCAACAGCAAGAGCTGCATCTGCTGCTGGAACAATCATGACTTTGTCTTCATGGGCTACTTCAAGTGTTGAAGAGGTAGCTTCAACAGGACCTGGCATTCGCTTTTTCCAGCTATATGTGTACAAGGACAGGAATGTGGTTGCTCAGCTTGTGAGAAGAGCTGAAAGGGCTGGATTCAAAGCCATTGCCCTTACTGTTGATACCCCAAGACTAGGACGCAGAGAAGCTGATATCAAGAACAGATTCACACTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGAAAGATGGACAAAGCTGATGACTCTGGACTTGCTTCATATGTTGCCGGTCAAATTGATCGTACTCTTAGCTGGAAGGATGTGAAGTGGCTTCAAACAATCACCAAACTGCCAATTCTGGTGAAGGGTGTGCTGACTGCTGAGGACACAAGGATAGCTGTACAAAGTGGTGCAGCTGGAATTATAGTGTCCAATCACGGAGCTAGACAACTTGATTATGTTCCAGCCACTATATCAGCCTTAGAAGAGGTTGTCAAAGCTGCTGAAGGTCGTGTTCCTGTATTTTTGGATGGTGGTGTTCGCCGCGGAACTGATGTCTTCAAGGCATTGGCACTAGGTGCCTCTGGCATATTTATTGGACGCCCAGTGGTGTTCTCCTTGGCTGCTGAAGGAGAGGCTGGTGTAAGAAATGTGCTGCGGATGCTACGTGAGGAGTTTGAGCTAACCATGGCTTTGAGTGGTTGCACCTCACTCAAGGATATCACTCGTGATCACATTGTCACTGATTGGGACCAACCACGCACTATCCCCCGCGCCTTGCCAAGATTATGAAAAACTTTTTCCAATGGGGGAAACACTTCTATATATGTTTCATGAACCTGTTCTTCTCATCCTTTCTTTTCCTTTTTGGACAACTCATTTAAACTTGTATTTGGATAACTCTATGCTTAATTTCTAAGCATTAATATGATGATACTTCTGTGGCTACTCTGCTGCTGCATTCACTCATTGTATATTATTAATTTTGAGTCCTTTATCAACTTTTTCTATGTTGTTTTTTAATTATCTTGACATTAATATAAAATATCCACTTATTTTATTGATAATT

Coding sequences of Glyma08g18750

Limit To All Plant Sequences

>Glyma08g18750.2   sequence type=CDS   gene model=Glyma08g18750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGATCACCAATGTCAGCGAGTATGAAGCTATTGCAAAGCAGAAGTTGCCAAAGATGGTGTTTGACTACTACGCATCTGGTGCAGAGGACCAGTGGACTCTGCAGGAGAACAGAAATGCCTTTTCCAGAATTTTGTTTCGGCCACGTATTCTTATTGATGTGAGCAAGATAGACATCACAACTACTGTCCTGGGCTTCAAAATATCCATGCCAATCATGCTTGCCCCAACAGCCATGCAGAAAATGGCTCATCCTGAGGGAGAATATGCAACAGCAAGAGCTGCATCTGCTGCTGGAACAATCATGACTTTGTCTTCATGGGCTACTTCAAGTGTTGAAGAGGTAGCTTCAACAGGACCTGGCATTCGCTTTTTCCAGCTATATGTGTACAAGGACAGGAATGTGGTTGCTCAGCTTGTGAGAAGAGCTGAAAGGGCTGGATTCAAAGCCATTGCCCTTACTGTTGATACCCCAAGACTAGGACGCAGAGAAGCTGATATCAAGAACAGATTCACACTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGAAAGATGGACAAAGCTGATGACTCTGGACTTGCTTCATATGTTGCCGGTCAAATTGATCGTACTCTTAGCTGGAAGGATGTGAAGTGGCTTCAAACAATCACCAAACTGCCAATTCTGGTGAAGGGTGTGCTGACTGCTGAGGACACAAGGATAGCTGTACAAAGTGGTGCAGCTGGAATTATAGTGTCCAATCACGGAGCTAGACAACTTGATTATGTTCCAGCCACTATATCAGCCTTAGAAGAGGTACATATAAACTTAGTCACCTTGAAACTTCTACACACTCATTTTAAGGCTGTTACATATACTTCTGTTATTGATACTTAG

>Glyma08g18750.4   sequence type=CDS   gene model=Glyma08g18750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGATCACCAATGTCAGCGAGTATGAAGCTATTGCAAAGCAGAAGTTGCCAAAGATGGTGTTTGACTACTACGCATCTGGTGCAGAGGACCAGTGGACTCTGCAGGAGAACAGAAATGCCTTTTCCAGAATTTTGTTTCGGCCACGTATTCTTATTGATGTGAGCAAGATAGACATCACAACTACTGTCCTGGGCTTCAAAATATCCATGCCAATCATGCTTGCCCCAACAGCCATGCAGAAAATGGCTCATCCTGAGGGAGAATATGCAACAGCAAGAGCTGCATCTGCTGCTGGAACAATCATGACTTTGTCTTCATGGGCTACTTCAAGTGTTGAAGAGGTAGCTTCAACAGGACCTGGCATTCGCTTTTTCCAGCTATATGTGTACAAGGACAGGAATGTGGTTGCTCAGCTTGTGAGAAGAGCTGAAAGGGCTGGATTCAAAGCCATTGCCCTTACTGTTGATACCCCAAGACTAGGACGCAGAGAAGCTGATATCAAGAACAGATTCACACTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGAAAGATGGACAAAGCTGATGACTCTGGACTTGCTTCATATGTTGCCGGTCAAATTGATCGTACTCTTAGCTGGAAGGATGTGAAGTGGCTTCAAACAATCACCAAACTGCCAATTCTGGTGAAGGGTGTGCTGACTGCTGAGGACACAAGGATAGCTGTACAAAGTGGTGCAGCTGGAATTATAGTGTCCAATCACGGAGCTAGACAACTTGATTATGTTCCAGCCACTATATCAGCCTTAGAAGAGGTTGTCAAAGCTGCTGAAGGTCGTGTTCCTGTATTTTTGGATGGTGGTGTTCGCCGCGGAACTGATGTCTTCAAGGCATTGGCACTAGGTGCCTCTGGCATATTTATTGGACGCCCAGTGGTGTTCTCCTTGGCTGCTGAAGGAGAGGCTGGTGTAAGAAATGTGCTGCGGATGCTACGTGAGGAGTTTGAGCTAACCATGGCTTTGAGTGGTTGCACCTCACTCAAGGATATCACTCGTGATCACATTGTCACTGATTGGGACCAACCACGCACTATCCCCCGCGCCTTGCCAAGATTATGA

>Glyma08g18750.5   sequence type=CDS   gene model=Glyma08g18750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGATCACCAATGTCAGCGAGTATGAAGCTATTGCAAAGCAGAAGTTGCCAAAGATGGTGTTTGACTACTACGCATCTGGTGCAGAGGACCAGTGGACTCTGCAGGAGAACAGAAATGCCTTTTCCAGAATTTTGTTTCGGCCACGTATTCTTATTGATGTGAGCAAGATAGACATCACAACTACTGTCCTGGGCTTCAAAATATCCATGCCAATCATGCTTGCCCCAACAGCCATGCAGAAAATGGCTCATCCTGAGGGAGAATATGCAACAGCAAGAGCTGCATCTGCTGCTGGAACAATCATGACTTTGTCTTCATGGGCTACTTCAAGTGTTGAAGAGGTAGCTTCAACAGGACCTGGCATTCGCTTTTTCCAGCTATATGTGTACAAGGACAGGAATGTGGTTGCTCAGCTTGTGAGAAGAGCTGAAAGGGCTGGATTCAAAGCCATTGCCCTTACTGTTGATACCCCAAGACTAGGACGCAGAGAAGCTGATATCAAGAACAGATTCACACTGCCACCATTTTTGACATTGAAGAACTTTGAAGGATTGGACCTTGGAAAGATGGACAAAGCTGATGACTCTGGACTTGCTTCATATGTTGCCGGTCAAATTGATCGTACTCTTAGCTGGAAGGATGTGAAGTGGCTTCAAACAATCACCAAACTGCCAATTCTGGTGAAGGGTGTGCTGACTGCTGAGGACACAAGGATAGCTGTACAAAGTGGTGCAGCTGGAATTATAGTGTCCAATCACGGAGCTAGACAACTTGATTATGTTCCAGCCACTATATCAGCCTTAGAAGAGGTTGTCAAAGCTGCTGAAGGTCGTGTTCCTGTATTTTTGGATGGTGGTGTTCGCCGCGGAACTGATGTCTTCAAGGCATTGGCACTAGGTGCCTCTGGCATATTTATTGGACGCCCAGTGGTGTTCTCCTTGGCTGCTGAAGGAGAGGCTGGTGTAAGAAATGTGCTGCGGATGCTACGTGAGGAGTTTGAGCTAACCATGGCTTTGAGTGGTTGCACCTCACTCAAGGATATCACTCGTGATCACATTGTCACTGATTGGGACCAACCACGCACTATCCCCCGCGCCTTGCCAAGATTATGA

Predicted protein sequences of Glyma08g18750

Limit To All Plant Sequences

>Glyma08g18750.2   sequence type=predicted peptide   gene model=Glyma08g18750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEITNVSEYEAIAKQKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDITTTVLGFKISMPIMLAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFEGLDLGKMDKADDSGLASYVAGQIDRTLSWKDVKWLQTITKLPILVKGVLTAEDTRIAVQSGAAGIIVSNHGARQLDYVPATISALEEVHINLVTLKLLHTHFKAVTYTSVIDT*

>Glyma08g18750.4   sequence type=predicted peptide   gene model=Glyma08g18750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEITNVSEYEAIAKQKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDITTTVLGFKISMPIMLAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFEGLDLGKMDKADDSGLASYVAGQIDRTLSWKDVKWLQTITKLPILVKGVLTAEDTRIAVQSGAAGIIVSNHGARQLDYVPATISALEEVVKAAEGRVPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGVRNVLRMLREEFELTMALSGCTSLKDITRDHIVTDWDQPRTIPRALPRL*

>Glyma08g18750.5   sequence type=predicted peptide   gene model=Glyma08g18750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEITNVSEYEAIAKQKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDITTTVLGFKISMPIMLAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFEGLDLGKMDKADDSGLASYVAGQIDRTLSWKDVKWLQTITKLPILVKGVLTAEDTRIAVQSGAAGIIVSNHGARQLDYVPATISALEEVVKAAEGRVPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGVRNVLRMLREEFELTMALSGCTSLKDITRDHIVTDWDQPRTIPRALPRL*

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