SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research




Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma08g18730): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma08g18730): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma08g18730

Feature Type:gene_model
Chromosome:Gm08
Start:14092834
stop:14098171
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G14410AT Annotation by Michelle Graham. TAIR10: Nucleotide/sugar transporter family protein | chr3:4815982-4817852 REVERSE LENGTH=340 SoyBaseE_val: 0ISS
GO:0006863GO-bp Annotation by Michelle Graham. GO Biological Process: purine nucleobase transport SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0022626GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome SoyBaseN/AISS
GO:0008514GO-mf Annotation by Michelle Graham. GO Molecular Function: organic anion transmembrane transporter activity SoyBaseN/AISS
KOG1441 KOG Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter JGI ISS
PTHR11132Panther SOLUTE CARRIER FAMILY 35 JGI ISS
PF03151PFAM Triose-phosphate Transporter family JGI ISS
UniRef100_B9SU51UniRef Annotation by Michelle Graham. Most informative UniRef hit: Triose phosphate/phosphate translocator, chloroplast, putative n=1 Tax=Ricinus communis RepID=B9SU51_RICCO SoyBaseE_val: 0ISS
UniRef100_UPI000233857DUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233857D related cluster n=1 Tax=unknown RepID=UPI000233857D SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g18730 not represented in the dataset

Glyma08g18730 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma15g40160 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g175600 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma08g18730.2   sequence type=CDS   gene model=Glyma08g18730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGATCTGAAGAACCGTAATTTCCTCACCTACGCGTACATTCTTCTCTACATTACTCTCTCCAGCGGCCAAATCTTCTTCAACAAGTGGGTTTTGTCTTCTAAGGAAATTAACTTCCCTTATCCTTTGGGGTTGACTCTACTTCACATGGTCTTCTCCTCTGTTCTGTGTTTTGTGTTAACCAAGATTCTGAAGGTTATGAAGGTTGAGGAGGGAATGACTCCTGAAATATACGCTACTTCGGTAGTGCCAATTGGGGCCATGTTTGCAATGACTCTTTGGCTGGGAAATACTGCCTACCTGTATATTTCTGTTGCTTTTGCACAAATGCTGAAGGCAATTATGCCTGTAGCTGTTTTTGTGCTTGGAGTAGCTGCAGGACTTGAGGTAATGAGCTACAAAATGCTATTAATCATGTCAGTGATTAGTTTTGGTGTTCTAGTAGCTTCTTATGGAGAGATAAATATAAACTGGATTGGAGTAGTTTACCAAATGGGAGGTGTTGTTGGTGAAGCTCTGAGACTTATCTTCATGGAGATTTTTGTTAAGAGGAAAGGTCTTAAGTTGAACCCTTTATCCGTGATGTATTATGTTAGTCCCTGCAGTGCAATTTGTTTGTTCCTTCCATGGATATTTCTGGAGAAACCGAAGATGGATGAACATGGACCATGGAACTTCCCACCTGTTTTGCTTATCCTCAACTGCCTTTGTACTTTTGCTCTAAACTTATCAGTTTTCCTTGTGATTACACATACAAGTGCTTTAACCATTCGTGTTGCCGGAGTTGTCAAGGATTGGGTGGTTGTCTTACTGTCTGCTGTTCTGTTTGCTGATACAAAGTTAACACTCATCAATTTGTTTGGTTATGCAATTGCCATTGCTGGGGTAGCAGCATATAATAATTGCAAGTTGAAAAAAGAAACCTCTCGTGACACCTCGGATGATTCCGACCCTGAATCTTCCCAAATGCAAGAGTCTCAGCCTTTAACGAGTAGATAG

>Glyma08g18730.2   sequence type=predicted peptide   gene model=Glyma08g18730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADLKNRNFLTYAYILLYITLSSGQIFFNKWVLSSKEINFPYPLGLTLLHMVFSSVLCFVLTKILKVMKVEEGMTPEIYATSVVPIGAMFAMTLWLGNTAYLYISVAFAQMLKAIMPVAVFVLGVAAGLEVMSYKMLLIMSVISFGVLVASYGEININWIGVVYQMGGVVGEALRLIFMEIFVKRKGLKLNPLSVMYYVSPCSAICLFLPWIFLEKPKMDEHGPWNFPPVLLILNCLCTFALNLSVFLVITHTSALTIRVAGVVKDWVVVLLSAVLFADTKLTLINLFGYAIAIAGVAAYNNCKLKKETSRDTSDDSDPESSQMQESQPLTSR*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo