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Report for Sequence Feature Glyma08g18680

Feature Type:gene_model
Chromosome:Gm08
Start:14046338
stop:14047291
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g18680
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G78370AT Annotation by Michelle Graham. TAIR10: glutathione S-transferase TAU 20 | chr1:29484428-29485204 REVERSE LENGTH=217 SoyBaseE_val: 1.00E-76ISS
GO:0000023GO-bp Annotation by Michelle Graham. GO Biological Process: maltose metabolic process SoyBaseN/AISS
GO:0006569GO-bp Annotation by Michelle Graham. GO Biological Process: tryptophan catabolic process SoyBaseN/AISS
GO:0009407GO-bp Annotation by Michelle Graham. GO Biological Process: toxin catabolic process SoyBaseN/AISS
GO:0009684GO-bp Annotation by Michelle Graham. GO Biological Process: indoleacetic acid biosynthetic process SoyBaseN/AISS
GO:0019252GO-bp Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process SoyBaseN/AISS
GO:0043085GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of catalytic activity SoyBaseN/AISS
GO:2000030GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of response to red or far red light SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0048046GO-cc Annotation by Michelle Graham. GO Cellular Compartment: apoplast SoyBaseN/AISS
GO:0004364GO-mf Annotation by Michelle Graham. GO Molecular Function: glutathione transferase activity SoyBaseN/AISS
GO:0019899GO-mf Annotation by Michelle Graham. GO Molecular Function: enzyme binding SoyBaseN/AISS
KOG0406 KOG Glutathione S-transferase JGI ISS
PTHR11260Panther GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING JGI ISS
PTHR11260:SF54Panther SUBFAMILY NOT NAMED JGI ISS
PF00043PFAM Glutathione S-transferase, C-terminal domain JGI ISS
PF02798PFAM Glutathione S-transferase, N-terminal domain JGI ISS
UniRef100_O49235UniRef Annotation by Michelle Graham. Most informative UniRef hit: 2,4-D inducible glutathione S-transferase n=1 Tax=Glycine max RepID=O49235_SOYBN SoyBaseE_val: 4.00E-89ISS
UniRef100_UPI000233857AUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233857A related cluster n=1 Tax=unknown RepID=UPI000233857A SoyBaseE_val: 1.00E-125ISS

Expression Patterns of Glyma08g18680
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g18680
ParalogEvidenceComments
Glyma15g40240 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g18680 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g175100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g18680
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g18680
>Glyma08g18680.2   sequence type=CDS   gene model=Glyma08g18680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAATGAGGTGATTCTGTTGAATTTCTGGTTAAGCCCTTATGGGATGAGAGTCCGCATCGCACTAGAGGTGAAGGGCATCAAGTATGAGAATAGAGAAGAGAACCTTAGCAACAAGAGCCCTTTACTCCTCCAAATGAATCCAGTTCATAAGAAAATACCAGTTCTCATCCACAACGGCAGATCCATCTGTTTGGATGATCGATCTCCCTTGTTGCCTTCTGATCCTTACCACAGATCACAAGCTAGATTCTGGGCTAACTATGTCGACACTAAGATGTGTGAGATTGCCTTGAAGTTTTGGACAACTGAAGGGGAAGAGAAAGAAGCTGCAAAGGAAGAATTTTTGGAGTGTCTGAAGTTATTCGAAGAACAACTTGGGGACAAGCCTTATTTTGGTGGAGACAACCTTGGTCTTCTGGATGTTGCACTAGTTCCATTGATCTGTTATTTTTATACCTATAATTTATATGGCAATTTCATCAACGAGGACAAGTACCCCAAATTCATTGCTTGGGCTAAGAGGTGTACTCAAAAAGAGAGTGTGTCAAAATGTTTTCCCGAGGAGCATAGG
Predicted protein sequences of Glyma08g18680
>Glyma08g18680.2   sequence type=predicted peptide   gene model=Glyma08g18680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGNEVILLNFWLSPYGMRVRIALEVKGIKYENREENLSNKSPLLLQMNPVHKKIPVLIHNGRSICLDDRSPLLPSDPYHRSQARFWANYVDTKMCEIALKFWTTEGEEKEAAKEEFLECLKLFEEQLGDKPYFGGDNLGLLDVALVPLICYFYTYNLYGNFINEDKYPKFIAWAKRCTQKESVSKCFPEEHR






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