Glyma08g18580 - SoyBase

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Report for Sequence Feature Glyma08g18580

Feature Type:	gene_model
Chromosome:	Gm08
Start:	13976658
stop:	13985414
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g18580

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G17220	AT	Annotation by Michelle Graham. TAIR10: Translation initiation factor 2, small GTP-binding protein \| chr1:5885383-5890165 FORWARD LENGTH=1026	SoyBase	E_val: 0	ISS
GO:0006413	GO-bp	Annotation by Michelle Graham. GO Biological Process: translational initiation	SoyBase	N/A	ISS
GO:0009902	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast relocation	SoyBase	N/A	ISS
GO:0010027	GO-bp	Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization	SoyBase	N/A	ISS
GO:0010155	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of proton transport	SoyBase	N/A	ISS
GO:0019288	GO-bp	Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway	SoyBase	N/A	ISS
GO:0034660	GO-bp	Annotation by Michelle Graham. GO Biological Process: ncRNA metabolic process	SoyBase	N/A	ISS
GO:0042793	GO-bp	Annotation by Michelle Graham. GO Biological Process: transcription from plastid promoter	SoyBase	N/A	ISS
GO:0046777	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0003743	GO-mf	Annotation by Michelle Graham. GO Molecular Function: translation initiation factor activity	SoyBase	N/A	ISS
GO:0003924	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTPase activity	SoyBase	N/A	ISS
GO:0005525	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTP binding	SoyBase	N/A	ISS
KOG1145	KOG	Mitochondrial translation initiation factor 2 (IF-2; GTPase)	JGI		ISS
PTHR23115	Panther	TRANSLATION FACTOR	JGI		ISS
PTHR23115:SF41	Panther		JGI		ISS
PF00009	PFAM	Elongation factor Tu GTP binding domain	JGI		ISS
PF03144	PFAM	Elongation factor Tu domain 2	JGI		ISS
PF04760	PFAM	Translation initiation factor IF-2, N-terminal region	JGI		ISS
PF11987	PFAM	Translation-initiation factor 2	JGI		ISS
UniRef100_I1KU76	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Translation initiation factor IF-2 n=1 Tax=Glycine max RepID=I1KU76_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_UPI0002338578	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002338578 related cluster n=1 Tax=unknown RepID=UPI0002338578	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g18580

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g18580

Paralog	Evidence	Comments
Glyma15g40370	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g18580 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g174200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g18580

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g18580

Limit To All Plant Sequences

>Glyma08g18580.1   sequence type=CDS   gene model=Glyma08g18580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTAATTTTGGTGGGGAACGTGCAAGGAACAATGACTTCTTTTGCTTCTCCAGTGAGTTTGGGGAACCTCATGGGTGTGAGTTCCTCTGGAAGGTCTCATTCTGTGGTGAGGAGAGTCTCTCTTTCAAGAGGGAACTGCAGGGGGAGAAAGAGATGGCATTGTGTGTCATTGTCTGTGTGTAGATATTCAGTTACCACAACTGATTTTGTTGCTGACCAAGGGAATTCAGTGTCCCTTGATTCTAACAGTAGTAGGAGTAAGGGTGGTGATGATGGTGCTGGTTTTGTGCTTAAGCCTCCTCCTAAGCCTGTGTTGAAGTCCCCAGAGAATAAGAGTGACCCCATTTTGGGGCCCTCAAGGACTACTGGGGATGTGGAAGAGAGGAATAAGGTGATTGAATCACTCGGGGAGGTGTTGGAGAAGGCAGAAAAGCTTGGGAGTTCGAAGGTGAATGGGGACAGGAATAATGGTTCAGTGAATAAACCGGTAAGGAGTAATGCAAATGCTAGTCCTAAGGCTGATAAACCGGTGAATTCAGCAGCACCTCAGAAGTCTAAAACGTTGAAGAGTGTATGGCGTAAAGGGGACACGGTTGCATCGGTTCAGAAGGTTGTGAAGGAAGTACCAAAGCCTATTAATGACAAGAATGAAGGAGAGAGGACTCAAACAAGGGGAGGGGAGAAGGTGGTATCTCAAACTCATGCTCCTCAACCGTCTTTGAAACCTCAACCACCTTCGCAACCTCAACCGATGTTGCTATCAAAACCTTCAATAGCTCCCCCACCTGCCAAAAAACCTGTTGTCTTGAAGGACAGGGGAGCAGCCGAGACAACATCTGTTAAATCTAAAGAAAAGAAGTCGCCCATCTTGATTGATAAGTTTGCTTCCAAGAAACCGGTAGTAGATCCTCTAATTGCACAAGCAGTTCTAGCCCCTCCAAAACCAGGGAAGGCACCTCCCCCGGGAAAGTTTAAAGATGATTTCCGGAAGAAAGGTGCTATGGCTGGGGGACCAAGAAGACGGATTTTAGAGGATGATGCAATTCATGACGAGGACGCATCTGAACTCAATGTCTCTATTCCTGGTGCTGCAACAGCTAGAAAAGGAAGGAAATGGAGTAAAGCAAGCCGAAGGGCAGCACGACTCCAGGCTGCCAGGGATGCAGCTCCCATCAAAGTAGAAATTCTAGAGGTTGGAGACAAAGGTATGCTGGTGGAGGAATTAGCCTACTGTTTGGCAACCAGTGAAGGTGAAATCCTGGGTTATCTATACTCCAAGGGAATTAAACCAGATGGGGTACAAACAATAGACAAAGATATGGTAAAGATGATTTGTAAAGAGTACGATGTGGAAGTCATAGATGCTGATCCATTCAAAGTTGAAGGTTTAGTTAAGAAAAGAGAAATTCTTGACGAAGATGACTTCGACAAACTCAAGGATAGGCCCCCTGTTATTACTATTATGGGACATGTGGATCATGGCAAGACAACTCTTTTGGATTATATACGGAAGAGCAAGGTAGCTGCTTCTGAAGCTGGTGGGATCACACAGGGAATTGGGGCCTATAAAGTGGAAGTACCTGTGGATGGGAAAAAGTTGCCGTGTGTTTTCCTTGACACTCCTGGGCATGAGGCATTTGGAGCAATGAGAGCTCGCGGAGCAAGTGTTACAGACATGGCTATTATTGTTGTGGCTGCCGATGATGGGATTCGTCCTCAAACAAATGAAGCTATAGCTCATGCCAAAGCAGCGGGAGTACCCATAATCATTGCAATAAACAAGATAGATAAAGATGGAGCAAATCCAGAACGAGTCATGCAAGAGCTTTCTTCAATTGGTTTAATGCCAGAAGACTGGGGTGGTGACATCCCAATGGTTCCGATAAGTGCTCTTAAAGGGAAGAATATAGATGATCTTTTGGAAACTGTTATGCTTGTTGCTGAGTTGCAAGAGCTGAAAGCTAATCCTGATAGAAGTGCGAAGGGAACAGTCGTTGAGGCAGGGCTAGATAAATCGAAGGGACCATTTGCTTCATTTATTGTGCAGAATGGCACCCTTAGACGGGGAGATATAGTAGTTTGTGGAGAAGCTTCTGGAAAGGTGCGGGCTTTATTTGATGATGGTGGAAAGCGGGTTGATGAAGCTTCACCTTCTATGCCTGTACAGGTTATTGGGTTGAATAATGTTCCAATTGCTGGTGATGAATTTGAGGTTGTTGAATCCCTCGATACTGCACGTGAAAGGGCAGAGGCTCGTGCTGAGTCATTGCGTAATGAGCGTATTTCAGCAAAGGCAGGGGATGGAAAGGTCACCCTTTCTTCCTTAGCTTCAGCCGTTTCATCAGGAAAGCTGTCTGGACTAGATTTGCATCAACTAAATATTATTTTGAAGGTTGATCTTCAGGGATCTATTGAAGCTGTCAGAAAAGCGCTGGAGATTCTACCACAAGACAATGTCACACTGAAGTTTTTGTTGGAGGCGACAGGTGATGTAAACACAAGTGATGTGGACCTTTCAGTTGCAAGCAAGGCCATCATTTTGGGATTTAATGTGAAAGCACCAGGCTCTGTGAAAAGCTATGGAGAGAACAAAGCTGTTGAGATTAGATTATACAGAGTCATTTATGAATTAATTGATGATGTACGAAAAGCAATGGAAGGGCTACTAGAACCTGTTGAGGAACAAGTAACAATTGGTTCAGCAGTAGTACGAGCCGTATTCAGCAGTGGTAGTGGTCGTGTTGCTGGATGCATGGTTACAGAGGGGAAAATACTAAATGACTGTGGTATTCGAGTCAAGCGGAAGGGGAAAGTAGTTCATGTTGGTATTCTTGATTCTTTGAGACGGGTGAAGGAGATTGTTAAAGAGGTAAATGCCGGTCTCGAGTGTGGACTTGGGTTAGAAGACTTTGATGATTGGGAAGAGGGTGACATTCTTGAAGCCTTCAACACATTTCAGAAGAAGAGGACCCTTGAAGAGGCCTCAGCCTCAATGGCATCTGCCGTGGAGGGAGTAGGAGTTGCATTGTAG

Predicted protein sequences of Glyma08g18580

Limit To All Plant Sequences

>Glyma08g18580.1   sequence type=predicted peptide   gene model=Glyma08g18580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLILVGNVQGTMTSFASPVSLGNLMGVSSSGRSHSVVRRVSLSRGNCRGRKRWHCVSLSVCRYSVTTTDFVADQGNSVSLDSNSSRSKGGDDGAGFVLKPPPKPVLKSPENKSDPILGPSRTTGDVEERNKVIESLGEVLEKAEKLGSSKVNGDRNNGSVNKPVRSNANASPKADKPVNSAAPQKSKTLKSVWRKGDTVASVQKVVKEVPKPINDKNEGERTQTRGGEKVVSQTHAPQPSLKPQPPSQPQPMLLSKPSIAPPPAKKPVVLKDRGAAETTSVKSKEKKSPILIDKFASKKPVVDPLIAQAVLAPPKPGKAPPPGKFKDDFRKKGAMAGGPRRRILEDDAIHDEDASELNVSIPGAATARKGRKWSKASRRAARLQAARDAAPIKVEILEVGDKGMLVEELAYCLATSEGEILGYLYSKGIKPDGVQTIDKDMVKMICKEYDVEVIDADPFKVEGLVKKREILDEDDFDKLKDRPPVITIMGHVDHGKTTLLDYIRKSKVAASEAGGITQGIGAYKVEVPVDGKKLPCVFLDTPGHEAFGAMRARGASVTDMAIIVVAADDGIRPQTNEAIAHAKAAGVPIIIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVPISALKGKNIDDLLETVMLVAELQELKANPDRSAKGTVVEAGLDKSKGPFASFIVQNGTLRRGDIVVCGEASGKVRALFDDGGKRVDEASPSMPVQVIGLNNVPIAGDEFEVVESLDTARERAEARAESLRNERISAKAGDGKVTLSSLASAVSSGKLSGLDLHQLNIILKVDLQGSIEAVRKALEILPQDNVTLKFLLEATGDVNTSDVDLSVASKAIILGFNVKAPGSVKSYGENKAVEIRLYRVIYELIDDVRKAMEGLLEPVEEQVTIGSAVVRAVFSSGSGRVAGCMVTEGKILNDCGIRVKRKGKVVHVGILDSLRRVKEIVKEVNAGLECGLGLEDFDDWEEGDILEAFNTFQKKRTLEEASASMASAVEGVGVAL*

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