Glyma08g18560 - SoyBase

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Report for Sequence Feature Glyma08g18560

Feature Type:	gene_model
Chromosome:	Gm08
Start:	13956976
stop:	13961573
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g18560

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G64130	AT	Annotation by Michelle Graham. TAIR10: cAMP-regulated phosphoprotein 19-related protein \| chr5:25664547-25665339 REVERSE LENGTH=115	SoyBase	E_val: 1.00E-46	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF04667	PFAM	cAMP-regulated phosphoprotein/endosulfine conserved region	JGI		ISS
UniRef100_I1KU72	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KU72_SOYBN	SoyBase	E_val: 6.00E-79	ISS
UniRef100_Q93Z49	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT5g64130/MHJ24_11 n=1 Tax=Arabidopsis thaliana RepID=Q93Z49_ARATH	SoyBase	E_val: 5.00E-44	ISS

Expression Patterns of Glyma08g18560

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g18560

Paralog	Evidence	Comments
Glyma15g40390	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g18560 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g174000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g18560

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g18560

Limit To All Plant Sequences

>Glyma08g18560.2   sequence type=transcript   gene model=Glyma08g18560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCGTAAGTAAACAATACTAATAACAATAATGGAACAAAAGAATAAGATCAAAATCAAATGAAGCAAATAAAAGAAGACAAAAAATAATAATTGAATGTAAAAGAGCATGGGATCTGAGACTGAGACAACAACTAAGGGTTATTAAGAGAGAGAAAGAGATACATAGTTAGAGAGAGAGCAGAGACACCGTTCGGTGCTCCGCTGAATTCGGTTGTGGCCCCTGCGCTCCGCTGCAATTTTACACTCAAAAGGACCTCATGTCTAACATAGAGGAGAACAAAGATCTGGGACAGATGGACGTGGATGCATCTGATGAGTCAGCTAACATGCCATCACCCCAAAAGCAGGAGGAGTCTGTAAAGAAAAAGTATGGAGGAATGCTGCCCAAAAAGCCACCACTCATATCTAAGGACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAGCAAGGCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTACAGCCAACGCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGAAGGGGGAAGTGTTCCAGCCGAGGATGCACCTTCCAACCAGTAAGCAGCAATCAGTCTTTTGATGATGTGCTGACTATTGTTCTAATACCTGAGTGAGTAGGTATCACTTCTTTGTTTTCAACAATAAAGGAAGCTTGTCATGTATTCATATTAGCACAAGACAAATGATTTGATCTGCACCTACGCAATAGACATTTACTTGGGATTTTGATTTTTGTGTTACTCTCTTTTCTCCCAAACAAGGTCTTTCTTTTTTTTGATTTTTTTAGAAAGGCAGTACAAGATTATATTAAAAAAAAAAAGAGTAAAAGATATAATTGTAAATTTGGTTTACGCTTGACACTATTTTTCATTTTAGTTCCTACATGAAAAAACTTGCACATGTTTGTGTTACCTTCAACAGCCTCTAACTTGCGTTTCCAAAAGATCTTCTTTCGTAATTTATGCATTGAACCTACATTGGAATGACTGCTACAGTGCCACTGCGGTTTCAATGGCAACACAAACATGTGATTACGTTTTGCTCCTTTTTATAATACC

>Glyma08g18560.3   sequence type=transcript   gene model=Glyma08g18560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTAAAAGAGCATGGGATCTGAGACTGAGACAACAACTAAGGGTTATTAAGAGAGAGAAAGAGATACATAGTTAGAGAGAGAGCAGAGACACCGTTCGGTGCTCCGCTGAATTCGGTTGTGGCCCCTGCGCTCCGCTGCAATTTTACACTCAAAAGGACCTCATGTCTAACATAGAGGAGAACAAAGATCTGGGACAGATGGACGTGGATGCATCTGATGAGTCAGCTAACATGCCATCACCCCAAAAGCAGGAGGAGTCTGTAAAGAAAAAGTATGGAGGAATGCTGCCCAAAAAGCCACCACTCATATCTAAGGACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAGCAAGGCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTACAGCCAACGCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGGGGGAAGTGTTCCAGCCGAGGATGCACCTTCCAACCAGTAAGCAGCAATCAGTCTTTTGATGATGTGCTGACTATTGTTCTAATACCTGAGTGAGTAGGTATCACTTCTTTGTTTTCAACAATAAAGGAAGCTTGTCATGTATTCATATTAGCACAAGACAAATGATTTGATCTGCACCTACGCAATAGACATTTACTTGGGATTTTGATTTTTGTGTTACTCTCTTTTCTCCCAAACAAGGTCTTTCTTTTTTTTGATTTTTTTAGAAAGGCAGTACAAGATTATATTAAAAAAAAAAAGAGTAAAAGATATAATTGTAAATTTGGTTTACGCTTGACACTATTTTTCATTTTAGTTCCTACATGAAAAAACTTGCACATGTTTGTGTTACCTTCAACAGCCTCT

Coding sequences of Glyma08g18560

Limit To All Plant Sequences

>Glyma08g18560.1   sequence type=CDS   gene model=Glyma08g18560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTAACATAGAGGAGAACAAAGATCTGGGACAGATGGACGTGGATGCATCTGATGAGTCAGCTAACATGCCATCACCCCAAAAGCAGGTGGAGGAGTCTGTAAAGAAAAAGTATGGAGGAATGCTGCCCAAAAAGCCACCACTCATATCTAAGGACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAGCAAGGCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTACAGCCAACGCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGAAGGGGGAAGTGTTCCAGCCGAGGATGCACCTTCCAACCAGTAA

>Glyma08g18560.2   sequence type=CDS   gene model=Glyma08g18560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTAACATAGAGGAGAACAAAGATCTGGGACAGATGGACGTGGATGCATCTGATGAGTCAGCTAACATGCCATCACCCCAAAAGCAGGAGGAGTCTGTAAAGAAAAAGTATGGAGGAATGCTGCCCAAAAAGCCACCACTCATATCTAAGGACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAGCAAGGCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTACAGCCAACGCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGAAGGGGGAAGTGTTCCAGCCGAGGATGCACCTTCCAACCAGTAA

>Glyma08g18560.3   sequence type=CDS   gene model=Glyma08g18560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTAACATAGAGGAGAACAAAGATCTGGGACAGATGGACGTGGATGCATCTGATGAGTCAGCTAACATGCCATCACCCCAAAAGCAGGAGGAGTCTGTAAAGAAAAAGTATGGAGGAATGCTGCCCAAAAAGCCACCACTCATATCTAAGGACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAGCAAGGCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTACAGCCAACGCAGCAGCAAACACGTTACCGGAAATCTCCTTATGCTCCTTCAGGAGAAGGGGGAAGTGTTCCAGCCGAGGATGCACCTTCCAACCAGTAA

Predicted protein sequences of Glyma08g18560

Limit To All Plant Sequences

>Glyma08g18560.1   sequence type=predicted peptide   gene model=Glyma08g18560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSNIEENKDLGQMDVDASDESANMPSPQKQVEESVKKKYGGMLPKKPPLISKDHERAYFDSADWALGKQGGEKPKGPLEALRPKLQPTQQQTRYRKSPYAPSGEEGGSVPAEDAPSNQ*

>Glyma08g18560.2   sequence type=predicted peptide   gene model=Glyma08g18560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSNIEENKDLGQMDVDASDESANMPSPQKQEESVKKKYGGMLPKKPPLISKDHERAYFDSADWALGKQGGEKPKGPLEALRPKLQPTQQQTRYRKSPYAPSGEEGGSVPAEDAPSNQ*

>Glyma08g18560.3   sequence type=predicted peptide   gene model=Glyma08g18560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSNIEENKDLGQMDVDASDESANMPSPQKQEESVKKKYGGMLPKKPPLISKDHERAYFDSADWALGKQGGEKPKGPLEALRPKLQPTQQQTRYRKSPYAPSGEGGSVPAEDAPSNQ*

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