Glyma08g18490 - SoyBase

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Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma08g18490

Feature Type:	gene_model
Chromosome:	Gm08
Start:	13884367
stop:	13893088
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g18490

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G20960	AT	Annotation by Michelle Graham. TAIR10: U5 small nuclear ribonucleoprotein helicase, putative \| chr1:7302591-7309914 REVERSE LENGTH=2171	SoyBase	E_val: 0	ISS
GO:0006259	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA metabolic process	SoyBase	N/A	ISS
GO:0009165	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleotide biosynthetic process	SoyBase	N/A	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0033044	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of chromosome organization	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005730	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleolus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0004386	GO-mf	Annotation by Michelle Graham. GO Molecular Function: helicase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0008026	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP-dependent helicase activity	SoyBase	N/A	ISS
GO:0017111	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity	SoyBase	N/A	ISS
KOG0951	KOG	RNA helicase BRR2, DEAD-box superfamily	JGI		ISS
PTHR11752	Panther	HELICASE SKI2W	JGI		ISS
PTHR11752:SF7	Panther	U5 SMALL NUCLEAR RIBONUCLEOPROTEIN 200 KDA HELICASE	JGI		ISS
PF00270	PFAM	DEAD/DEAH box helicase	JGI		ISS
PF00271	PFAM	Helicase conserved C-terminal domain	JGI		ISS
PF02889	PFAM	Sec63 Brl domain	JGI		ISS
UniRef100_G7IJ55	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: U5 small nuclear ribonucleoprotein 200 kDa helicase n=1 Tax=Medicago truncatula RepID=G7IJ55_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KU63	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KU63_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g18490

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g18490

Paralog	Evidence	Comments
Glyma15g40460	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g18490 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g173500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g18490

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g18490

Limit To All Plant Sequences

>Glyma08g18490.1   sequence type=CDS   gene model=Glyma08g18490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGCACCTAGGAGGAGGCGCTGAAGCGCACGCTCGTTTCAAGCAGTACGAGTACCGCGCGAATTCGAGTCTGGTCCTCACCACCGACTCGCGACCCCGCGACACGCATGAGCCCACCGGCGAGCCCGAGTCCCTGTGGGGGAAAATCGATCCCAAGAGCTTCGGTGACCGCGCTTACCGTGGACGGCCGCCGGAGCTCGACGAAAAGCTCGAGAAGGCGAAGAACAAGAAGAAGAAGAAAGACCGTGATGCTGCCGCTGATGATGCCACCGCTGTCCCCTCTAAGCGGCGTCGAGTCCAGCACGATAGCGTGCTCTCCACCTCCGATGACGGCGTGTACCAGCCGAAGACAAAAGAGACCCGCGCCGCCTATGAGGCGATGCTCAGCGTCATCCAGAACCAGCTCGGCGGCCAGCCCCTCAGCATTGTCAGCGCTGCCGCCGATGAGATCCTCGCCGTGCTAAAAAATGACACGGTTAAGAACCCTGATAAGAAGAAAGACATTGAGAAGCTTTTGAATCCTATACCTGGCCATGTTTTTGACCAGCTTGTGTCCATTGGGAAATTAATTACTGATTTTCAGGAGGTTGTGGATGTTCCCAATGGGAGTTCCGCGATGGATGGTGAGGAGGGGCTTGATGATGATGTTGGTGTTGCTGTTGAGTTTGAGGAGAATGAGGATGATGATGAGGAGAGTGATTTGGATATTGTGCAGGATGAGGAGGAAGATGATGAGGATGTCGCGGAGCCAAATGGTTCCGGGGCTATGCAGATGGGTGGAATTGATGATGAGGATATGGAGGAGGGTAATGAAGGGATGGGTTTGAATGTGCAGGATATTGATGCTTACTGGCTTCAGAGGAAAATCTCTCAGGCTTTTGAGCAGCAGATTGATCCGCAGCACTGCCAGAAGCTTGCGGAGGAGGTGCTCAAGATTCTGGCTGAGGGGGATGATAGGGAGGTGGAGAACAAGCTTTTGTTTCACCTTGAGTTTGATAAATTCAGCCTCATTAAGTTTTTGTTGCGGAATAGGTTGAAGATTGTGTGGTGCACGCGGTTGGCGAGGGCGCAGGACCAGGAGGAGAGGGAGAAGATTGAGGAGGAGATGAAGGGGACGGAGTTGCAGCCAATTTTGGAGCAGTTGCACGCAACAAGGGCTTCTGCAAAGGAGAGGCAGAAGAATTTGGAGAAGAGTATTAGGGAAGAGGCTAGGAGGTTGAAGGATGATACTGGTGGAGATGGAGATAAGGAAAGTAGGGATAGGAGCAGGAGGGGGGTTGCTGATAGAGATGGGGAGAGTGGATGGTTGAAGGGTCAGCGCCAGATGCTTGATCTTGATAGCATTGCTTTCACTCAAGGTGGTTTTTTCATGGCTAAAAAGAAGTGTGACCTGCCTGATGGGTCTTATAGGCATCTCAGCAAGGGTTATGAAGAGATTCATGTGCCTGCCTTGAAGGCTAAACCGCTTGATCCTAATGAGAAGCTCGTGAAGATATCTTCTATGCCTGATTGGGCACAGCCAGCTTTCAAAGGAATGACTCAGTTAAATAGGGTGCAGAGCAAGGTTTATGAGACTGCCCTTTTCAAGCCTGATAATCTTCTGCTCTGTGCTCCAACTGGGGCTGGAAAAACTAATGTTGCAGTGCTGACGATACTTCAACAAATTGCACGGCACAGGAATCCTGAAGATGGTTCGATTGACCATAGTGCTTATAAAATTGTTTATGTTGCACCTATGAAAGCTCTTGTGGCTGAGGTTGTTGGGAACTTGTCCAATAGATTGCAGGAATATGATGTTAAAGTTAGGGAGCTCAGTGGAGATCAGTCACTAACCCGGCAACAGATAGAAGAAACTCAGATTATTGTGACAACTCCTGAGAAGTGGGATATTATCACTCGAAAGTCGGGTGATCGCACTTATACACAGCTTGTAAAGCTTCTTATCATTGATGAGATTCATCTACTTCATGATAACAGAGGACCTGTTCTGGAAAGTATTGTTGCTAGAACGGTAAGGCAGATTGAAACCACAAAGGACTATATTCGGTTGGTTGGATTGTCTGCTACTCTCCCTAATTATGAAGATGTTGCATTGTTTTTGCGTGTTGATCTGAAGAAGGGGTTGTTTTATTTTGATAATAGTTATAGACCTGTTCCTCTTTCTCAACAGTATGTTGGAATCACAGTGAAGAAGCCACTTCAGAGGTTCCAGTTGATGAATGATATCTGTTATGAGAAAGTTATGGCCGTGGCTGGAAAACATCAGGTTCTTATCTTTGTACATTCAAGGAAAGAAACTGCCAAAACTGCTAGAGCCATCAGAGATGCTGCACTTGCAAATGACACTCTTGGTAGATTTCTTAAAGAAGACAGTGCAAGTCGTGAGATTCTTCATACTCATACTGATCTTGTCAAGAGCAATGATCTTAAAGATCTTCTGCCATATGGTTTTGCTATTCATCATGCTGGTATGACCAGGACAGATCGCCAGCTTGTTGAGGATCTCTTTGCTGATGGACATGTGCAAGTGTTGGTTTCTACTGCGACCCTTGCTTGGGGTGTGAATCTACCTGCTCATACAGTTATAATTAAAGGGACACAGATTTATAATCCCGAAAAGGGGGCCTGGACTGAATTAAGTCCTCTTGATGTGATGCAGATGCTTGGTCGTGCTGGAAGGCCCCAATATGACTCATATGGTGAGGGAATAATTGTTACTGGCCATAGTGAGTTGCAGTATTACCTCTCTCTTATGAACCAACAACTTCCTATTGAAAGTCAGTTTGTGTCCAAGCTGGCTGATCAGCTGAATGCAGAAATTGTTCTTGGTACTGTACAAAACGCTAGGGAGGCCTGTAATTGGATTGGATACACCTACTTGTATGTCCGTATGTTGAGGAATCCTTCATTATATGGTATAGCACCTGATGTCCTAACAAGAGATATAACATTGGAAGAGAGAAGGGCTGATTTAATTCATACGGCTGCAACCATCTTGGATAGAAATAATTTGGTGAAGTATGATAGGAAGAGTGGATATTTTCAGGTCACTGACTTGGGTCGTATTGCCAGCTACTACTACATAACACACGGATCCATATCCACATATAACGAGCATTTGAAGCCTACAATGGGGGACATAGAGCTTTGTCGATTGTTCTCTTTGAGTGAAGAATTCAAGTATGTAACAGTAAGGCAAGATGAGAAGATGGAGCTAGCAAAGCTTTTGGATCGTGTTCCCATCCCCATCAAGGAAAGTCTGGAAGAGCCTAGTGCTAAGATCAATGTTTTGTTGCAAGCCTACATTTCACAATTAAAGCTTGAAGGACTCTCGCTGACCTCTGATATGGTCTTTATAACTCAGAGTGCTGGACGTCTTTTGCGAGCTCTTTTTGAGATTGTCTTGAAACGTGGCTGGGCGCAGTTGGCTGAGAAGGCTTTGAACTTATGCAAAATGGGGACCAAGAGGATGTGGAGTGTCCAGACACCTCTTCGTCAGTTCAATGGAATTCCAAGTGATTTATTAACGAAGTTGGAGAAGAAAGATTTGGCTTGGGAAAGGTATTATGACCTATCATCACAAGAGATAGGTGAACTCATTCGTGCACCGAAGATGGGAAGGACTCTTCATAAGTTTATCCACCAGTTTCCTAAATTGAACCTTGCTGCACATGTGCAGCCAATTACTCGCACAGTTTTGAGGGTGGAGCTGACGATAACTCCAGACTTTGCATGGGATGACAGAATTCATGGATATGTTGAACCTTTTTGGGTGATTGTTGAGGATAATGATGGAGAATATATTCTTCACCATGAATATTTTATGCTGAAAAAGCAATATATTGATGAGGACCACACACTGAACTTCACAGTGCCAATATACGAGCCTCTTCCCCCTCAGTACTTTATCCGTGTTGTTTCAGATAGATGGCTTGGATCACAAACTGTTTTACCCGTTTCTTTCAGGCATTTAATCTTACCTGAAAAGTACCCTCCACCAACTGAACTACTGGATCTGCAACCACTTCCTGTGACTGCCTTGCGAAATTCGTCATATGAATCTCTTTATAAGGATTTTAAGCATTTTAATCCTGTTCAGACACAAGTCTTCACAGTTCTGTATAATTCTGATGACAATGTCTTAGTTGCTGCTCCAACAGGGAGCGGTAAGACTATATGTGCAGAGTTTGCTATTTTGAGGAATCATCAAAAAGGGCCTGATAGTGTCATGCGTGTCGTTTATGTTGCACCCGTTGAAGCTCTTGCCAAGGAGCGGTATCGTGATTGGGAGAGGAAATTTGGAGGTGGTCTTAAATTGAGGGTGGTTGAATTGACTGGAGAAACTGCGACCGACTTGAAACTGCTTGAGAAAGGTCAGATTATTATTAGTACCCCTGAGAAATGGGATGCTTTATCTCGCCGCTGGAAACAGAGGAAACATGTTCAACAAGTTAGTCTTTTCATCATTGATGAGCTCCACTTGATTGGAGGTCAAGGAGGTCCTATTTTAGAGGTTGTAGTCTCCAGGATGAGATATATTGCCAGTCAGGTTGAGAACAAGAGTCGTATTGTGGCTTTGTCTACCTCACTTGCGAATGCAAAAGATCTGGGAGAATGGATCGGAGCTACCTCCCATGGCCTTTTCAATTTCCCCCCTGGTGTTCGTCCTGTGCCTTTGGAAATTCACATTCAGGGCATAGATATTACTAATTTTGAGGCAAGGATGCAGGCAATGACCAAGCCAACTTACACTGCAATTGTTCAACATGCCAAGAATGGAAAACCTGCTCTCATATTTGTACCTACAAGGAAGCATGTCCGACTTACAGCTGTGGATATGATTACATACTCAGGTGCAGACAGTGGGGAGAAGCCATTTTTATTGCGGTCAGCCGAAGAGCTTGAACCTTTTCTTGACAAGATTACTGACGAAATGTTGAAAGTTACTTTACGGGAAGGAGTTGGATACTTGCATGAGGGATTGAACAGTCTTGATCATGACATTGTGACTCAGCTATTTGAAGCTGGCTGGATACAAGTCTGTGTTTTAAACAGTTCCATGTGTTGGGGAGTGACTTTATTGGCTCATTTGGTAGTTGTGATGGGCACACAATACTATGATGGGCGGGAGAATGCACAGACAGATTACCCCGTTACTGATCTTCTGCAGATGATGGGTCATGCCAGCCGTCCTTTGGTAGACAATTCTGGAAAATGCGTCATCTTGTGCCATGCTCCTCGAAAGGAGTACTACAAGAAGTTTTTATATGAAGCTTTCCCGGTTGAAAGCCATCTTCACCACTTCTTGCATGATAACTTGAATGCTGAAATTGTTGCTGGAATTATTGAGAACAAGCAAGATGCTGTAGATTATCTTACGTGGACATTCATGTACAGGCGGCTCACACAGAATCCCAATTATTACAACTTGCAAGGAGTTAGTCACAGACATCTTTCTGATCACCTCTCAGAGATGGTGGAAAATACTTTGAGTGATTTAGAAGCGGGCAAGTGCATTACAATTGAGGATGATATGGAGCTTGCTCCTCTCAATCTTGGAATGATTGCATCCTATTATTACATCAGTTACACAACAATTGAAAGGTTTTCATCATCTGTGACTTCAAAAACTAAAATGAAGGGTCTTTTGGAGATTCTGTCTTCAGCTTCAGAGTATGCTCAGCTTCCAATACGACCTGGAGAGGAAGAGGTTGTTCGTAAGTTAATTAATCACCAGAGGTTTTCCTTTGAAAACCCCAAGGTTACAGATCCGCATGTTAAAGCTAATGCTTTGCTTCAGGCCCATTTCTCTAGGCAATTTGTTGGTGGGAACCTTGCATTGGACCAGAAGGAGGTGCTTCTTTCTGCAAATAGACTGCTTCAGGCAATGGTAGATGTGATATCGAGCAACGGTTGGCTGAGCCTGGCCTTACTTGCTATGGAAGTCAGTCAAATGGTGACACAGGGAATGTGGGAACGCGACTCCATGCTGCTTCAACTTCCTCATTTCACAAAGGATCTGGCTAAGAAATGCCAGGAGAACCCAGGGAAGAGTATAGAAACTGTGTTTGATTTATTAGAAATGGAGGATGAGGAGAGGCAAAAATTGTTGGGCATGTCAGATTTGCAGTTGTTGGATATTGCCCGATTTTGTAACCGATTCCCTAATATTGATTTGTCATATGAGGTGCTGGACAGTGACAATGTGCGGGCTGGGGAGGTTGTCACTGTGCTGGTCACTCTTGAGCGGGATTTTGAGGGAAGGACAGAAGTAGGACCTGTTGACGCTCCCAGGTATCCAAAAGCCAAGGAGGAAGGGTGGTGGCTCATTGTTGGTGATACCAAAACCAATCTGTTGCTTGCCATTAAACGGGTTTCCCTGCAGCGGAAATTAAAAGCCAAACTGGAATTTGATGCTCCTGCTGATGCTGGAAGGAAATCCTATTCGCTTTATTTCATGTGTGATTCATACTTGGGTTGTGATCAGGAGTATGGTTTCACCGTTGATGTTAATGCTGATGGCGGTGATGAAGATAGCGGCAGAGACTGA

Predicted protein sequences of Glyma08g18490

Limit To All Plant Sequences

>Glyma08g18490.1   sequence type=predicted peptide   gene model=Glyma08g18490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAHLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPKSFGDRAYRGRPPELDEKLEKAKNKKKKKDRDAAADDATAVPSKRRRVQHDSVLSTSDDGVYQPKTKETRAAYEAMLSVIQNQLGGQPLSIVSAAADEILAVLKNDTVKNPDKKKDIEKLLNPIPGHVFDQLVSIGKLITDFQEVVDVPNGSSAMDGEEGLDDDVGVAVEFEENEDDDEESDLDIVQDEEEDDEDVAEPNGSGAMQMGGIDDEDMEEGNEGMGLNVQDIDAYWLQRKISQAFEQQIDPQHCQKLAEEVLKILAEGDDREVENKLLFHLEFDKFSLIKFLLRNRLKIVWCTRLARAQDQEEREKIEEEMKGTELQPILEQLHATRASAKERQKNLEKSIREEARRLKDDTGGDGDKESRDRSRRGVADRDGESGWLKGQRQMLDLDSIAFTQGGFFMAKKKCDLPDGSYRHLSKGYEEIHVPALKAKPLDPNEKLVKISSMPDWAQPAFKGMTQLNRVQSKVYETALFKPDNLLLCAPTGAGKTNVAVLTILQQIARHRNPEDGSIDHSAYKIVYVAPMKALVAEVVGNLSNRLQEYDVKVRELSGDQSLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKDYIRLVGLSATLPNYEDVALFLRVDLKKGLFYFDNSYRPVPLSQQYVGITVKKPLQRFQLMNDICYEKVMAVAGKHQVLIFVHSRKETAKTARAIRDAALANDTLGRFLKEDSASREILHTHTDLVKSNDLKDLLPYGFAIHHAGMTRTDRQLVEDLFADGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQYDSYGEGIIVTGHSELQYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAREACNWIGYTYLYVRMLRNPSLYGIAPDVLTRDITLEERRADLIHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYITHGSISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPIKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLCKMGTKRMWSVQTPLRQFNGIPSDLLTKLEKKDLAWERYYDLSSQEIGELIRAPKMGRTLHKFIHQFPKLNLAAHVQPITRTVLRVELTITPDFAWDDRIHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIDEDHTLNFTVPIYEPLPPQYFIRVVSDRWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNSSYESLYKDFKHFNPVQTQVFTVLYNSDDNVLVAAPTGSGKTICAEFAILRNHQKGPDSVMRVVYVAPVEALAKERYRDWERKFGGGLKLRVVELTGETATDLKLLEKGQIIISTPEKWDALSRRWKQRKHVQQVSLFIIDELHLIGGQGGPILEVVVSRMRYIASQVENKSRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGIDITNFEARMQAMTKPTYTAIVQHAKNGKPALIFVPTRKHVRLTAVDMITYSGADSGEKPFLLRSAEELEPFLDKITDEMLKVTLREGVGYLHEGLNSLDHDIVTQLFEAGWIQVCVLNSSMCWGVTLLAHLVVVMGTQYYDGRENAQTDYPVTDLLQMMGHASRPLVDNSGKCVILCHAPRKEYYKKFLYEAFPVESHLHHFLHDNLNAEIVAGIIENKQDAVDYLTWTFMYRRLTQNPNYYNLQGVSHRHLSDHLSEMVENTLSDLEAGKCITIEDDMELAPLNLGMIASYYYISYTTIERFSSSVTSKTKMKGLLEILSSASEYAQLPIRPGEEEVVRKLINHQRFSFENPKVTDPHVKANALLQAHFSRQFVGGNLALDQKEVLLSANRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFTKDLAKKCQENPGKSIETVFDLLEMEDEERQKLLGMSDLQLLDIARFCNRFPNIDLSYEVLDSDNVRAGEVVTVLVTLERDFEGRTEVGPVDAPRYPKAKEEGWWLIVGDTKTNLLLAIKRVSLQRKLKAKLEFDAPADAGRKSYSLYFMCDSYLGCDQEYGFTVDVNADGGDEDSGRD*

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