Glyma08g18460 - SoyBase

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Report for Sequence Feature Glyma08g18460

Feature Type:	gene_model
Chromosome:	Gm08
Start:	13856227
stop:	13858068
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g18460

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G58660	AT	Annotation by Michelle Graham. TAIR10: Ribosomal protein L1p/L10e family \| chr3:21701574-21702914 FORWARD LENGTH=446	SoyBase	E_val: 2.00E-109	ISS
GO:0001510	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA methylation	SoyBase	N/A	ISS
GO:0006164	GO-bp	Annotation by Michelle Graham. GO Biological Process: purine nucleotide biosynthetic process	SoyBase	N/A	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0009220	GO-bp	Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005730	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleolus	SoyBase	N/A	ISS
GO:0005840	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ribosome	SoyBase	N/A	ISS
GO:0015934	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: large ribosomal subunit	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
GO:0003735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome	SoyBase	N/A	ISS
KOG1685	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR23105	Panther	60S RIBOSOMAL PROTEIN L10A - RELATED	JGI		ISS
PTHR23105:SF3	Panther	PBK1-RELATED	JGI		ISS
UniRef100_G7IGY3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ribosomal L1 domain-containing protein n=1 Tax=Medicago truncatula RepID=G7IGY3_MEDTR	SoyBase	E_val: 2.33E-156	ISS
UniRef100_I1KU61	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KU61_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g18460

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g18460

Paralog	Evidence	Comments
Glyma15g40520	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g18460 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g173300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g18460

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g18460

Limit To All Plant Sequences

>Glyma08g18460.1   sequence type=CDS   gene model=Glyma08g18460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCCGAGAACGTAAGCACCGATACGGTGTCGAAAGCCGTCGACGCTCTCCTGAAATGGCGTCGCTCCCAATCTGAAACCCTAAAACCAAAACTCTTCGACGAAGACGAGGAATATGTGTACCTGATCCTGACGCTGAAGAAGATCCCTTCAAAATCCCGCGTGAACCCTCACAAGATCCCTCTCCCCCACTCCCTCTTCTCCCCTTTCTCCGAGCAGTGCCTCATCCTCGACGACCGCCCAAACAAGGCCCGCGTCACCAAAGCCCAGGCCCAAGCCCGCATCCAGTCGGAATCCATCCCCGTCAATAAAATCCTCAAGCTCTCCAAGCTCGCCTCCGACTACCGCCCCTTCGAGGCCAAGCGGAAGCTCTGCGACTCCTACGATCTCTTTTTCGCTGAGAAGAGCATTGTGCCGCTCCTTCCGCGGCTTCTCGGGAAGAGTTTCTTCAAGAAGAGGAAGATTCCGGTGCCGGTGGATTTGAAGAAGGGGAACTGGAAGGAGCAGGTGGAGAAGGCATGTTCGTCCGCGATGCTGTTCATGAGGACTGGGACCTGCAGTGTTGTTAGGGTTGCCAAGGTGAGGATGGAGAGGGATGAGATTGTTGAGAATGTCGTTGCCGCGATTGAAGGCGCTGTGGAGGTTGTCCCGAAGAAGTGGGGGAATGTGAGGTCCTTGCATTTGAAGCTGCTGGAGAGCCTGGCGCTGCCGGTGTACCAGACGGTTCCGGATGTGAAATTGAAGATTGATGGATTTAAAGTCGAGGAGGGGGCGACGACGACGACGAAGAAGAAGAATGAAACGAAGGAGAAGGACAGTGAGGGTGAGGTTAGTGATTCGAAGAAGAAGAAGGGGAGGATTCATGAGGTTAGGTACATGGATGAGATTGAAGATCAATTGGCCAGCGATGATAGTGAAGATGAGATGGTGAGTAAGAAGAGGAAGAAAGGAGGTTCGAGTGAGTTGAGTGGTGTTGAGCAATTGAAGAAGTTGGTGTTTAATGAGTTGACTGCCAAGGGGAAGAAGAAGAAGAAGGGCTTGTCTGTTGGGGGGGTTAAGGGAGATGCGATTGAGGGGAGTGGAAGTGAGTTGGTTGTTAAGGATCAAGAGTCAGGAGTGAAGAAGAAGAAGAAGAAGCGAGAGGAAGTGAAGGCAAAGGCTACTAAAAGTGTAAAGGCTACGAAAGGTGTGAAGGCTAAGAAAATTAAGAAGGCTGCGTGA

Predicted protein sequences of Glyma08g18460

Limit To All Plant Sequences

>Glyma08g18460.1   sequence type=predicted peptide   gene model=Glyma08g18460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASENVSTDTVSKAVDALLKWRRSQSETLKPKLFDEDEEYVYLILTLKKIPSKSRVNPHKIPLPHSLFSPFSEQCLILDDRPNKARVTKAQAQARIQSESIPVNKILKLSKLASDYRPFEAKRKLCDSYDLFFAEKSIVPLLPRLLGKSFFKKRKIPVPVDLKKGNWKEQVEKACSSAMLFMRTGTCSVVRVAKVRMERDEIVENVVAAIEGAVEVVPKKWGNVRSLHLKLLESLALPVYQTVPDVKLKIDGFKVEEGATTTTKKKNETKEKDSEGEVSDSKKKKGRIHEVRYMDEIEDQLASDDSEDEMVSKKRKKGGSSELSGVEQLKKLVFNELTAKGKKKKKGLSVGGVKGDAIEGSGSELVVKDQESGVKKKKKKREEVKAKATKSVKATKGVKAKKIKKAA*

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