Glyma08g18440 - SoyBase

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Report for Sequence Feature Glyma08g18440

Feature Type:	gene_model
Chromosome:	Gm08
Start:	13830886
stop:	13834950
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g18440

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G79060	AT	Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G56020.1); Has 3399 Blast hits to 980 proteins in 195 species: Archae - 0; Bacteria - 839; Metazoa - 390; Fungi - 256; Plants - 154; Viruses - 9; Other Eukaryotes - 1751 (source: NCBI BLink). \| chr1:29741873-29743063 FORWARD LENGTH=396	SoyBase	E_val: 6.00E-62	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1KU59	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KU59_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q7XTU4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: OSJNBa0058K23.8 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7XTU4_ORYSJ	SoyBase	E_val: 9.00E-13	ISS

Expression Patterns of Glyma08g18440

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g18440

Paralog	Evidence	Comments
Glyma15g40570	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g18440 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g173100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g18440

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g18440

Limit To All Plant Sequences

>Glyma08g18440.2   sequence type=transcript   gene model=Glyma08g18440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGGGAGACACGTGGCCCTAGTTTCCATGTAGCTGGAGAGAGGTGTTATATATGCGTCTCCGCAGCAACCAAAGTGAATCAAAACATTGGTTGCATTGACAATGGCTTCCCTGGCCTGTGTCAACCACCTCCCTCCCTGGCTCTCCCCTCGCCCCGGATCCGACCCCGAACCCGACTTCGAGTTCCCCTTAGACCCTCCCACCACCATGCTCCCCGCCGACCAGCTCTTCTCCGACGGCAAACTCCTCCCTCTCCACCTCAAACCTCTTTCCACCACCACTCCTCAAACCCCCAAATCACCTTCCTCCGCTTCCGTTAACACCGTCACCCCCCCCACCACCACCTCCTCCTCCTCCGCCGACCCCTACCTCTTCTCCCCCAAAGCCCCCCGCTGCTCCTCCCGCTGGAAAGACCTCCTCGGCCTCAAAAAACTCTACCAAACCACAAACAACACCAAAACCACACCTTCCTCAACCTCAGCCAAATCCCTAAAAATCCTCCTCCACCGCAAAACGACGTCGTCGTCTACCTCCTCCTTCTCCTCGGAAAACGCGCCTTTGTTAACCTCAATTTCTTCCGACGCCGAATCCCTCTCCATCTCCTCCTCGCGCCTCTCTCTTTCCTCCTCCTCCTCAAGCCACGACCACGATGACCTCCCTCGCCTATCCCTCGATTCCGATAAACCTAACCCTAACCTTAGCCTTAACACTAATCAGATCTCACTCCACCGCAACCCTAACCGTAGAATTCGCCTAGTCAAAAACCGCACGAACTCATTCGACGCGAACAAGCACTCGTCGGACCAGCCTTCCCAGCTTTCCCGCCCGGGGAGGAGTCCGATCCGGCGGGAATCGGAAACGGTCACGTGCAGGGGAGTTTCCGTGGACAGCCCTAGAATGAACTCTTCGGGGAAAATAGTGTTTCAGAGCTTAGAACGAAGCTCGAGTAGTCCAAGCACTTTCAACGGTGGGCCCCGCTTCAAGCACCGCGGAATGGAACGCTCTTATTCCGCCAACGTTAGGGTTACGCCGGTGCTCAACGTCCCCGTCTGCTCCCTCCGTGGGGCATCGAAATCGGGTTTTATCGGCTTCGGACAACTCTTCTCCTCGCCGCAGAAGAAAGAAGGAACAACAACGGGGAAAGGGCACAGGAGCATTCGGAATTGACGTAAATACCCTTCTATAAAGAAAGTAAAAAAAAGGGAAGAGAGGACGTGTTGTTATTGATTGAGGGGTTTTGGTTGGTTGATTTAATTTGATTTTCTTAAGTTTTTAAACCTTTTTAGGTTAATTTATGTAAATACAGCGAGGGTGGGGTTCGATTTTTAGATGCTGTTGTTTGATGATGAATTTATAAAAGATCCAGTTACTTGTTTCTAACGTGGTTGATTCAGGGTATTTTTCTTACAGTGCTGTATTATTTTTTTTTATTTGTTAAACTTAGTATTTTAATAATGGTAAAATGGAAATGTGCTTTTTTTATATTAAAATCAAATAAAATGTTTCGAGATCTGTGGAGGAATCATGTTGAGCTTATCATGTGTGTCTGCTTGCGAGTTTTCTTTTATTTTTTTGGGGGGTTTTGAGTATTATTTTTTACTGTGTTGTGAATTGTTTTGGGAAATGATGCCAAAGATTGAAACAGAGGCGCCAGCGCTGCTGAATTACTATTTGCACGTCAGTCTGATCCCAAAACCTTCATGGTTTGCAATTAATTAATTAACCAAAGTTTTCATTTTAGCTTAGTGACAAATTAATGTGTTTATTTTTTTTTGTGTGTGTTGTGATTTGTGAATTGTTTTGGAAAATGATGACAAAGATTGAAACAGAGGCGCTAGCGCTGCTGAATTATTATTTGCACGTCAGTCTGATCCCAAAACCTTCATGGCATTCAGTTATTTAATTGACCAAAAGTTTTTATTTCAGCTTAGTGACAACATGAATGTGTTTATTTAACTTTTTTTTAATTTGTGATGTATGATAGTTGTATATGGATATATTATGTTTTTTTTATGGGGTGGAATGAACTACTATGTGGCTGTGGGGTGAGTGGTCCACACATGAAGTTCTTCAATGTGTCACCTTTATGGAAGATTCAATTGGGTGGGGGCAGGGTTCTTTTTTCTTATAATCAAGATGTGTGTACTTTGATTGGACATTGAATGAGTTTTTTTTTTCCTAGAACAGATTATCAAACCTTCAATGAATAATTTGCCCTTTCTGTGCGTCCAAGATTTTGATGGAGGAGTGGAAAAGAACACCCACAAATTGGGTCATCATCTTTGTTGTCCCTTTGGTTTTGTTGGATAAACTTGTTCCTTCACTCTTCACTTTGATGAATTGAATGATAAAAAAGATCCCACTCCCTCCTAGACACTTGATTATTATCAATCAAGCCTTATGGGTCCCTCCCTAATTAGATATGGTAGGACCATTTCCTGTTTGCCGCAACCAATTTTGATATTTGCTATATAACCAATATGCATAATTGAGGGAAAGGATATGTTCAAAAGTTCAATGCCTTTGGACCCCCACCCTTTTTTTTTTTTTTTTTTATCGTATTCTCCACATCGTGATAGAAATGGTTCTAGTTCCGTGGTACTATCACGGGTCTTAGTCACATTGAAATCACATATACTTTGGGGATTAAACTCGTAATTAGATAGGACCCTCTGTCGGTTTAGTTGCCTCGGTTCATTCATTAATTAATTCACATTTCCAAAACCTAAACTAAGATAGTTGAAGTTTTTTAATATATATAATACGCTTCCTTGTACTCTACTACTCGTACCACTAAGGTGCGAGCAAACAACTCTACAGCAACGGAAACGAAAAGTGTACCAACCAATAAGATAGTATATAGTATAATAATGATGTACCTTTTTTCTTGTGTTTTTAAAAAGGTGGGAATATGCTAAAATCACGTGGCTAACATGTTGCCATACTTTCGGCCTCTGGCCACCACAAAAGCCAAAACCCATGTGAGAGAGAGTTTTATGTATGATTTATAGTTGTCTAAATAAACAAATGAATGTTGTATGCATCAGTCTGTGTAACGGATGTGGATGGGAGGGAGGAGACAAGGTTCTTTCCTATCTGATATAATCTTTTTATTTTATTGATACAAGTTATATCGTCCGTTATTAATAAATCAATATGAACTTTTCATGTGAAAATTATCAATCTTATGTGTGCCCATTTTCTAACCTGTAACTTTCTAGTGCCTAGACTAAGCAATAGGGTTGGCTTTCTTTCTTTTATCGGTGATAGTAATGAATCACAAACAAAATCTCTTATTCTCTTATAAAGTGGATTAAAAGATATTTGTGATTTCTGAACTGAGATAAAAAAAAAGTACTGGCGACTTTAAAACATCTATGAACCCAGTAATAGATATTCTTTGCCCCTTATATTTTCGACCAACATGTTACTGACAATTTAGGCAATAAATTAAGAGTGAGTTGGATTATATTTGCAAGTGTTGGTATAAAATAAAATGTGATTAATTGGTGGATACATTATATTATAGACGTGAGTGAGTTGGATTTACAGAAAATTCAGTTGTCGTTCTTGGGCAAAGTACCATGGGGGGTTTTGTCGAGTGGCGTCCCATCTTTTCATTTGCGCGCATGCTTTGGGGTTTGAGGCTCTGTCTCTAAAGCCCTCCCTAATCGATTTGACATTTTCTCATTCACACCATAGCTATTATTGCTATTCTATTCAAATAAATAATTTTCAGTCTTTGACTCTTTCTGGACTATTCGCTGATGAAAGATAATTTACTCTCATGGTCTTGTAAAATTATACAATTGTTTGAAGAACATTATACTGGCCTGTCAATGTAATAATGGTCTAAAAAATAACTAGAGTTTGTGTAATTTCATAAAAATTTAAAGGTGTTTAATATGATTTTACTCTAAAGAATATAGTAATTATGAGCGTTTTTCTTTTTCTTATATAAACCTT

Coding sequences of Glyma08g18440

Limit To All Plant Sequences

>Glyma08g18440.1   sequence type=CDS   gene model=Glyma08g18440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCCCTGGCCTGTGTCAACCACCTCCCTCCCTGGCTCTCCCCTCGCCCCGGATCCGACCCCGAACCCGACTTCGAGTTCCCCTTAGACCCTCCCACCACCATGCTCCCCGCCGACCAGCTCTTCTCCGACGGCAAACTCCTCCCTCTCCACCTCAAACCTCTTTCCACCACCACTCCTCAAACCCCCAAATCACCTTCCTCCGCTTCCGTTAACACCGTCACCCCCCCCACCACCACCTCCTCCTCCTCCGCCGACCCCTACCTCTTCTCCCCCAAAGCCCCCCGCTGCTCCTCCCGCTGGAAAGACCTCCTCGGCCTCAAAAAACTCTACCAAACCACAAACAACACCAAAACCACACCTTCCTCAACCTCAGCCAAATCCCTAAAAATCCTCCTCCACCGCAAAACGACGTCGTCGTCTACCTCCTCCTTCTCCTCGGAAAACGCGCCTTTGTTAACCTCAATTTCTTCCGACGCCGAATCCCTCTCCATCTCCTCCTCGCGCCTCTCTCTTTCCTCCTCCTCCTCAAGCCACGACCACGATGACCTCCCTCGCCTATCCCTCGATTCCGATAAACCTAACCCTAACCTTAGCCTTAACACTAATCAGATCTCACTCCACCGCAACCCTAACCGTAGAATTCGCCTAGTCAAAAACCGCACGAACTCATTCGACGCGAACAAGCACTCGTCGGACCAGCCTTCCCAGCTTTCCCGCCCGGGGAGGAGTCCGATCCGGCGGGAATCGGAAACGGTCACGTGCAGGGGAGTTTCCGTGGACAGCCCTAGAATGAACTCTTCGGGGAAAATAGTGTTTCAGAGCTTAGAACGAAGCTCGAGTAGTCCAAGCACTTTCAACGGTGGGCCCCGCTTCAAGCACCGCGGAATGGAACGCTCTTATTCCGCCAACGTTAGGGTTACGCCGGTGCTCAACGTCCCCGTCTGCTCCCTCCGTGGGGCATCGAAATCGGGTTTTATCGGCTTCGGACAACTCTTCTCCTCGCCGCAGAAGAAAGAAGGAACAACAACGGGGAAAGGGCACAGGAGCATTCGGAATTGA

>Glyma08g18440.2   sequence type=CDS   gene model=Glyma08g18440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCCCTGGCCTGTGTCAACCACCTCCCTCCCTGGCTCTCCCCTCGCCCCGGATCCGACCCCGAACCCGACTTCGAGTTCCCCTTAGACCCTCCCACCACCATGCTCCCCGCCGACCAGCTCTTCTCCGACGGCAAACTCCTCCCTCTCCACCTCAAACCTCTTTCCACCACCACTCCTCAAACCCCCAAATCACCTTCCTCCGCTTCCGTTAACACCGTCACCCCCCCCACCACCACCTCCTCCTCCTCCGCCGACCCCTACCTCTTCTCCCCCAAAGCCCCCCGCTGCTCCTCCCGCTGGAAAGACCTCCTCGGCCTCAAAAAACTCTACCAAACCACAAACAACACCAAAACCACACCTTCCTCAACCTCAGCCAAATCCCTAAAAATCCTCCTCCACCGCAAAACGACGTCGTCGTCTACCTCCTCCTTCTCCTCGGAAAACGCGCCTTTGTTAACCTCAATTTCTTCCGACGCCGAATCCCTCTCCATCTCCTCCTCGCGCCTCTCTCTTTCCTCCTCCTCCTCAAGCCACGACCACGATGACCTCCCTCGCCTATCCCTCGATTCCGATAAACCTAACCCTAACCTTAGCCTTAACACTAATCAGATCTCACTCCACCGCAACCCTAACCGTAGAATTCGCCTAGTCAAAAACCGCACGAACTCATTCGACGCGAACAAGCACTCGTCGGACCAGCCTTCCCAGCTTTCCCGCCCGGGGAGGAGTCCGATCCGGCGGGAATCGGAAACGGTCACGTGCAGGGGAGTTTCCGTGGACAGCCCTAGAATGAACTCTTCGGGGAAAATAGTGTTTCAGAGCTTAGAACGAAGCTCGAGTAGTCCAAGCACTTTCAACGGTGGGCCCCGCTTCAAGCACCGCGGAATGGAACGCTCTTATTCCGCCAACGTTAGGGTTACGCCGGTGCTCAACGTCCCCGTCTGCTCCCTCCGTGGGGCATCGAAATCGGGTTTTATCGGCTTCGGACAACTCTTCTCCTCGCCGCAGAAGAAAGAAGGAACAACAACGGGGAAAGGGCACAGGAGCATTCGGAATTGA

Predicted protein sequences of Glyma08g18440

Limit To All Plant Sequences

>Glyma08g18440.1   sequence type=predicted peptide   gene model=Glyma08g18440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASLACVNHLPPWLSPRPGSDPEPDFEFPLDPPTTMLPADQLFSDGKLLPLHLKPLSTTTPQTPKSPSSASVNTVTPPTTTSSSSADPYLFSPKAPRCSSRWKDLLGLKKLYQTTNNTKTTPSSTSAKSLKILLHRKTTSSSTSSFSSENAPLLTSISSDAESLSISSSRLSLSSSSSSHDHDDLPRLSLDSDKPNPNLSLNTNQISLHRNPNRRIRLVKNRTNSFDANKHSSDQPSQLSRPGRSPIRRESETVTCRGVSVDSPRMNSSGKIVFQSLERSSSSPSTFNGGPRFKHRGMERSYSANVRVTPVLNVPVCSLRGASKSGFIGFGQLFSSPQKKEGTTTGKGHRSIRN*

>Glyma08g18440.2   sequence type=predicted peptide   gene model=Glyma08g18440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASLACVNHLPPWLSPRPGSDPEPDFEFPLDPPTTMLPADQLFSDGKLLPLHLKPLSTTTPQTPKSPSSASVNTVTPPTTTSSSSADPYLFSPKAPRCSSRWKDLLGLKKLYQTTNNTKTTPSSTSAKSLKILLHRKTTSSSTSSFSSENAPLLTSISSDAESLSISSSRLSLSSSSSSHDHDDLPRLSLDSDKPNPNLSLNTNQISLHRNPNRRIRLVKNRTNSFDANKHSSDQPSQLSRPGRSPIRRESETVTCRGVSVDSPRMNSSGKIVFQSLERSSSSPSTFNGGPRFKHRGMERSYSANVRVTPVLNVPVCSLRGASKSGFIGFGQLFSSPQKKEGTTTGKGHRSIRN*

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