Glyma08g18410 - SoyBase

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Report for Sequence Feature Glyma08g18410

Feature Type:	gene_model
Chromosome:	Gm08
Start:	13811411
stop:	13816198
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g18410

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G65700	AT	Annotation by Michelle Graham. TAIR10: Small nuclear ribonucleoprotein family protein \| chr1:24434463-24435870 REVERSE LENGTH=98	SoyBase	E_val: 1.00E-57	ISS
GO:0002237	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to molecule of bacterial origin	SoyBase	N/A	ISS
GO:0006626	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to mitochondrion	SoyBase	N/A	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0010103	GO-bp	Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis	SoyBase	N/A	ISS
GO:0048443	GO-bp	Annotation by Michelle Graham. GO Biological Process: stamen development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005732	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: small nucleolar ribonucleoprotein complex	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG1784	KOG	Small Nuclear ribonucleoprotein splicing factor	JGI		ISS
PTHR15588	Panther	LSM1	JGI		ISS
PF01423	PFAM	LSM domain	JGI		ISS
UniRef100_C6SWT2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SWT2_SOYBN	SoyBase	E_val: 2.00E-62	ISS
UniRef100_I3NMM0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Hevea brasiliensis RepID=I3NMM0_HEVBR	SoyBase	E_val: 1.00E-57	ISS

Expression Patterns of Glyma08g18410

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g18410 not represented in the dataset	Glyma08g18410 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g18410

Paralog	Evidence	Comments
Glyma15g40590	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g18410 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g172900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g18410

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g18410

Limit To All Plant Sequences

>Glyma08g18410.3   sequence type=transcript   gene model=Glyma08g18410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCGTGGCTTTGTTCGAAATGAGTCTGCGACTGAGAAGTGCGACGCTGCTGCAAAGTGCAAGCGGATTTGGTCTTCTTCTTTACTCCCAATCATTTCTCTGTAATCTCCTATCTCATTGTCGTATCGAATTTCAAGTGCAAGGATAAGTGTGTTATCTATCTAAAAACACAAGATGTCAGCTGGGCCTGGACTTGAATCTCTAGTAGATCAGACAATTTCAGTCATTACAAATGATGGACGAAATATAGTGGGAGTCCTGAAAGGTTTTGACCAGGCAACAAATATTATTCTTGATGAGTCCCATGAACGGGTTTATTCTACAAAGGAAGGTGTGCAACAACTTGTTCTTGGTTTGTACATCATCAGGGGTGACAATATAAGTGTTGTTGGTGAACTGGATGAAGAACTAGATTCTAGTCTGGATTTGTCAAAACTCAGAGCTCATCCTTTGAAACCTGTTATCCATTGAAGTGAAATACTATGTGCCGGATTTAATGAATGTATGCCTACTTGGTGGAAACAGTCTTAGATTTGCGGCATTGTATACTAGAGTACGTTGTGAAACTCTATAAGAATATGCAGACAGCATAATATTTCTAATATTCTGATTCTGTTAGCATGTAAGTCTTGTCAAACAAACAAATTCTGAGACTATTTGATGTGAAAAAACTATCTTCTATTTGGCCATTGTTTTACATATAGATGTTTCTTTCAGTGGGAGACTTATATGGTGGCT

>Glyma08g18410.4   sequence type=transcript   gene model=Glyma08g18410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGAAAAAAAAAAAAACGTTTCTTTAAGCCCAAATGTTCGTGGCTTTGTTCGAAATGAGTCTGCGACTGAGAAGTGCGACGCTGCTGCAAAGTGCAAGCGGATTTGGTCTTCTTCTTTACTCCCAATCATTTCTCTGTGCAAGGATAAGTGTGTTATCTATCTAAAAACACAAGATGTCAGCTGGGCCTGGACTTGAATCTCTAGTAGATCAGACAATTTCAGTCATTACAAATGATGGACGAAATATAGTGGGAGTCCTGAAAGGTTTTGACCAGGCAACAAATATTATTCTTGATGAGTCCCATGAACGGGTTTATTCTACAAAGGAAGGTGTGCAACAACTTGTTCTTGGTTTGTACATCATCAGGGGTGACAATATAAGTGTTGTTGGTGAACTGGATGAAGAACTAGATTCTAGTCTGGATTTGTCAAAACTCAGAGCTCATCCTTTGAAACCTGTTATCCATTGAAGTGAAATACTATGTGCCGGATTTAATGAATGTATGCCTACTTGGTGGAAACAGTCTTAGATTTGCGGCATTGTATACTAGAGTACGTTGTGAAACTCTATAAGAATATGCAGACAGCATAATATTTCTAATATTCTGATTCTGTTAGCATGTAAGTCTTGTCAAACAAACAAATTCTGAGACTATTTGATGTGAAAAAACTATCTTCTATTTGGCCATTGTTTTACATATAGATGTTTCTTTCAGTGGGAGACTTATATGGTGGCTACACGAATGCATCTTATAT

Coding sequences of Glyma08g18410

Limit To All Plant Sequences

>Glyma08g18410.2   sequence type=CDS   gene model=Glyma08g18410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAGCTGGGCCTGGACTTGAATCTCTAGTAGATCTCATTACAAATGATGGACGAAATATAGTGGGAGTCCTGAAAGGTTTTGACCAGGCAACAAATATTATTCTTGATGAGTCCCATGAACGGGTTTATTCTACAAAGGAAGGTGTGCAACAACTTGTTCTTGGTTTGTACATCATCAGGGGTGACAATATAAGTGTTGTTGGTGAACTGGATGAAGAACTAGATTCTAGTCTGGATTTGTCAAAACTCAGAGCTCATCCTTTGAAACCTGTTATCCATTGA

>Glyma08g18410.3   sequence type=CDS   gene model=Glyma08g18410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAGCTGGGCCTGGACTTGAATCTCTAGTAGATCAGACAATTTCAGTCATTACAAATGATGGACGAAATATAGTGGGAGTCCTGAAAGGTTTTGACCAGGCAACAAATATTATTCTTGATGAGTCCCATGAACGGGTTTATTCTACAAAGGAAGGTGTGCAACAACTTGTTCTTGGTTTGTACATCATCAGGGGTGACAATATAAGTGTTGTTGGTGAACTGGATGAAGAACTAGATTCTAGTCTGGATTTGTCAAAACTCAGAGCTCATCCTTTGAAACCTGTTATCCATTGA

>Glyma08g18410.4   sequence type=CDS   gene model=Glyma08g18410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAGCTGGGCCTGGACTTGAATCTCTAGTAGATCAGACAATTTCAGTCATTACAAATGATGGACGAAATATAGTGGGAGTCCTGAAAGGTTTTGACCAGGCAACAAATATTATTCTTGATGAGTCCCATGAACGGGTTTATTCTACAAAGGAAGGTGTGCAACAACTTGTTCTTGGTTTGTACATCATCAGGGGTGACAATATAAGTGTTGTTGGTGAACTGGATGAAGAACTAGATTCTAGTCTGGATTTGTCAAAACTCAGAGCTCATCCTTTGAAACCTGTTATCCATTGA

Predicted protein sequences of Glyma08g18410

Limit To All Plant Sequences

>Glyma08g18410.2   sequence type=predicted peptide   gene model=Glyma08g18410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSAGPGLESLVDLITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGELDEELDSSLDLSKLRAHPLKPVIH*

>Glyma08g18410.3   sequence type=predicted peptide   gene model=Glyma08g18410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSAGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGELDEELDSSLDLSKLRAHPLKPVIH*

>Glyma08g18410.4   sequence type=predicted peptide   gene model=Glyma08g18410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSAGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGELDEELDSSLDLSKLRAHPLKPVIH*

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