Glyma08g18240 - SoyBase

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Report for Sequence Feature Glyma08g18240

Feature Type:	gene_model
Chromosome:	Gm08
Start:	13698156
stop:	13704251
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g18240

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G04170	AT	Annotation by Michelle Graham. TAIR10: eukaryotic translation initiation factor 2 gamma subunit \| chr1:1097423-1099702 FORWARD LENGTH=465	SoyBase	E_val: 0	ISS
GO:0009220	GO-bp	Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0003743	GO-mf	Annotation by Michelle Graham. GO Molecular Function: translation initiation factor activity	SoyBase	N/A	ISS
GO:0003924	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTPase activity	SoyBase	N/A	ISS
GO:0005525	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTP binding	SoyBase	N/A	ISS
GO:0008135	GO-mf	Annotation by Michelle Graham. GO Molecular Function: translation factor activity, nucleic acid binding	SoyBase	N/A	ISS
KOG0466	KOG	Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase)	JGI		ISS
PTHR23115	Panther	TRANSLATION FACTOR	JGI		ISS
PTHR23115:SF9	Panther	EUKARYOTIC TRANSLATION INITIATION FACTOR 2 GAMMA SUBUNIT (EIF-2- GAMMA)	JGI		ISS
PF00009	PFAM	Elongation factor Tu GTP binding domain	JGI		ISS
PF03144	PFAM	Elongation factor Tu domain 2	JGI		ISS
PF09173	PFAM	Initiation factor eIF2 gamma, C terminal	JGI		ISS
UniRef100_G7IJ99	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Eukaryotic translation initiation factor 2 subunit n=1 Tax=Medicago truncatula RepID=G7IJ99_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KU39	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KU39_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g18240

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g18240

Paralog	Evidence	Comments
Glyma15g40750	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g18240 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g171500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g18240

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma08g18240

Limit To All Plant Sequences

>Glyma08g18240.2   sequence type=transcript   gene model=Glyma08g18240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TATTTTTTTCAATATTATTACAATTACAATAGCACCTCCCTTGTGACCCGACCCGACCCATAAAGGGGTTAGGGTTTCGCGTTTTTTGTTAGATATAAATACACAAACTAGGGTTTTGTCGCCACAGTTCACATTAAGGGATCGTCTTCTGCAGAAATTTGCGCCATCGTCGAGAGAAGCGTGAGAGACTTCTCGTTTATGATGAGAGCTAAGATAGTTTAGTTGTCAAGTCATAAATCAGTATCATCACTTTAAATTTCATTAGAAGCTGTCAAAATGTCACGGAAGGGTTTGATGGAGCAAGACCTGAGTAAGTTGGATGTAACAAAGTTGCATCCACTTTCTCCAGAAGTCATATCTCGGCAGGCTACTATTAATATCGGCACTATAGGTCACGTGGCCCATGGCAAGTCAACAGTTGTGAAAGCAATATCAGGTGTCCAGACTGTGCGTTTCAAAAATGAGTTGGAGCGTAACATTACAATCAAGCTTGGCTATGCAAATGCAAAAATATACAAGTGTGAAGATGAACGATGTCCAAGGCCTATGTGCTACAAGGCTTATGGAAGTGGAAAGGAAGATAGTCCTATGTGTGACGTGCCAGGGTTTGAAAACAGCAAGATGAAATTGCTAAGGCATGTTTCATTTGTGGATTGTCCGGGACATGATATTCTTATGGCTACAATGCTTAATGGAGCAGCAATCATGGATGGAGCGTTGCTACTCATAGCTGCTAATGAAAGCTGCCCACAACCACAAACATCTGAGCATTTAGCTGCTGTAGAAATCATGCGTCTACAGCACATAATAATCCTTCAGAACAAGGTAGACTTGATTCAAGAAAATGTCGCAATCAATCAGCATGAGGCAATTTCAAAGTTTATACAAGGAACTGTTGCTGATGGTGCACCAGTAGTACCTATTTCAGCACAGTTGAAGTATAATATTGATGTTGTGTGCGAATATATTGTGAAGAAGATCCCAATCCCTGAAAGGAACTTTGTTTCTCCACCTAACATGATTGTTATTCGGTCATTTGATGTCAATAAACCTGGTTATGAGGTTGATGAAATTAAAGGAGGTGTAGCTGGTGGAAGCATTCTGAGGGGTGTTTTGAAGGTCAATCAATTCATTGAAGTTCGTCCTGGCATTGTTGTTAAAGACGAGAGTGGAAATATCAGATGCACACCCATATACTCAAGAATAGTTTCATTGTACGCTGAACAAAATGAGCTTCAATTTGCTGTGCCTGGAGGCCTAATTGGTGTTGGGACAACAATGGATCCCACTTTGACACGCGCTGATAGGTTGGTAGGTCAAGTTTTAGGAGAGGTTGGATCACTACCTGAGGTTTTTGTTGAACTGGAGGTAGGTGGCTATGCCCAATTGTCAATTTGCCTCCTGCCATGAATGATCAGTCAACTTTTTGAGTTTTATGATTCATAAGATTAGAGAGGATGAAGATCCTTATATTCATTAATCTCTTTGTTTGCCAATCTGTTGGGGTTGTGTCAGTGGTTAAGATGTGGACTTTCTCTAAACTCTATATGCTTAATAATTCAATCTTGTGCAACAAAACCTTATTTTGTCACATCTCATGAACGATGAGACTCAGTTCCCTACTTCCTCCGTTGTGGTTGAAATTCTTTATTTATAGATGAATTTTGGATTTGGTCTTGCAGGTAAACTTTTTCCTGCTTCGACGACTTCTTGGTGTCCGAACAAAAGGGTCTGAGAGACAGGGGAAGGTATCCAAGCTGGCCAAAGGAGAGATGCTAATGTTGAACATTGGATCAATGTCGACGGGGGCTAGAGTAGTTGCTGTGAAGAATGACTTGGCGAAGTTGCAACTTACTTCCCCTGTGTGCACTAGCAAGGGTGAGAAGATTGCACTTAGTCGACGTGTTGAGAAGCATTGGCGTCTTATCGGGTGGGGACAAATCCAAGCTGGAATCACTCTTGATGTCCCTCCCGCCCCCCATCTGAGTTGAACACTGATCACAAGAAACACCAGCAGCTATAAAAAACTGAGATGAATTTAGATATGTGGGAAGGGAGGCAATTGTTGGGAACCATTTTTGTGAGGTGGAGAAGAAAACGTTTTTTGATTGTTGTCTTCTATTTTGTTTTCACATCGTTATTGGTTTATTTTCCCAACTGTACCTCTTATTGAAGTTGTATCCTATGCTGTGATTGAATTCAGGCTGGGAGTGAGAATCTCAGCAAGCACTTGTTTCAATCTATGGTATCTTATCAATATGCAATTATGCACTATTGGTTCTACATGTTATATACGTGAAGCATTTTATTTTGAA

Coding sequences of Glyma08g18240

Limit To All Plant Sequences

>Glyma08g18240.1   sequence type=CDS   gene model=Glyma08g18240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCACGGAAGGGTTTGATGGAGCAAGACCTGAGTAAGTTGGATGTAACAAAGTTGCATCCACTTTCTCCAGAAGTCATATCTCGGCAGGCTACTATTAATATCGGCACTATAGGTCACGTGGCCCATGGCAAGTCAACAGTTGTGAAAGCAATATCAGGTGTCCAGACTGTGCGTTTCAAAAATGAGTTGGAGCGTAACATTACAATCAAGCTTGGCTATGCAAATGCAAAAATATACAAGTGTGAAGATGAACGATGTCCAAGGCCTATGTGCTACAAGGCTTATGGAAGTGGAAAGGAAGATAGTCCTATGTGTGACGTGCCAGGGTTTGAAAACAGCAAGATGAAATTGCTAAGGCATGTTTCATTTGTGGATTGTCCGGGACATGATATTCTTATGGCTACAATGCTTAATGGAGCAGCAATCATGGATGGAGCGTTGCTACTCATAGCTGCTAATGAAAGCTGCCCACAACCACAAACATCTGAGCATTTAGCTGCTGTAGAAATCATGCGTCTACAGCACATAATAATCCTTCAGAACAAGGTAGACTTGATTCAAGAAAATGTCGCAATCAATCAGCATGAGGCAATTTCAAAGTTTATACAAGGAACTGTTGCTGATGGTGCACCAGTAGTACCTATTTCAGCACAGTTGAAGTATAATATTGATGTTGTGTGCGAATATATTGTGAAGAAGATCCCAATCCCTGAAAGGAACTTTGTTTCTCCACCTAACATGATTGTTATTCGGTCATTTGATGTCAATAAACCTGGTTATGAGGTTGATGAAATTAAAGGAGGTGTAGCTGGTGGAAGCATTCTGAGGGGTGTTTTGAAGGTCAATCAATTCATTGAAGTTCGTCCTGGCATTGTTGTTAAAGACGAGAGTGGAAATATCAGATGCACACCCATATACTCAAGAATAGTTTCATTGTACGCTGAACAAAATGAGCTTCAATTTGCTGTGCCTGGAGGCCTAATTGGTGTTGGGACAACAATGGATCCCACTTTGACACGCGCTGATAGGTTGGTAGGTCAAGTTTTAGGAGAGGTTGGATCACTACCTGAGGTTTTTGTTGAACTGGAGGTAAACTTTTTCCTGCTTCGACGACTTCTTGGTGTCCGAACAAAAGGGTCTGAGAGACAGGGGAAGGTATCCAAGCTGGCCAAAGGAGAGATGCTAATGTTGAACATTGGATCAATGTCGACGGGGGCTAGAGTAGTTGCTGTGAAGAATGACTTGGCGAAGTTGCAACTTACTTCCCCTGTGTGCACTAGCAAGGGTGAGAAGATTGCACTTAGTCGACGTGTTGAGAAGCATTGGCGTCTTATCGGGTGGGGACAAATCCAAGCTGGAATCACTCTTGATGTCCCTCCCGCCCCCCATCTGAGTTGA

>Glyma08g18240.2   sequence type=CDS   gene model=Glyma08g18240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCACGGAAGGGTTTGATGGAGCAAGACCTGAGTAAGTTGGATGTAACAAAGTTGCATCCACTTTCTCCAGAAGTCATATCTCGGCAGGCTACTATTAATATCGGCACTATAGGTCACGTGGCCCATGGCAAGTCAACAGTTGTGAAAGCAATATCAGGTGTCCAGACTGTGCGTTTCAAAAATGAGTTGGAGCGTAACATTACAATCAAGCTTGGCTATGCAAATGCAAAAATATACAAGTGTGAAGATGAACGATGTCCAAGGCCTATGTGCTACAAGGCTTATGGAAGTGGAAAGGAAGATAGTCCTATGTGTGACGTGCCAGGGTTTGAAAACAGCAAGATGAAATTGCTAAGGCATGTTTCATTTGTGGATTGTCCGGGACATGATATTCTTATGGCTACAATGCTTAATGGAGCAGCAATCATGGATGGAGCGTTGCTACTCATAGCTGCTAATGAAAGCTGCCCACAACCACAAACATCTGAGCATTTAGCTGCTGTAGAAATCATGCGTCTACAGCACATAATAATCCTTCAGAACAAGGTAGACTTGATTCAAGAAAATGTCGCAATCAATCAGCATGAGGCAATTTCAAAGTTTATACAAGGAACTGTTGCTGATGGTGCACCAGTAGTACCTATTTCAGCACAGTTGAAGTATAATATTGATGTTGTGTGCGAATATATTGTGAAGAAGATCCCAATCCCTGAAAGGAACTTTGTTTCTCCACCTAACATGATTGTTATTCGGTCATTTGATGTCAATAAACCTGGTTATGAGGTTGATGAAATTAAAGGAGGTGTAGCTGGTGGAAGCATTCTGAGGGGTGTTTTGAAGGTCAATCAATTCATTGAAGTTCGTCCTGGCATTGTTGTTAAAGACGAGAGTGGAAATATCAGATGCACACCCATATACTCAAGAATAGTTTCATTGTACGCTGAACAAAATGAGCTTCAATTTGCTGTGCCTGGAGGCCTAATTGGTGTTGGGACAACAATGGATCCCACTTTGACACGCGCTGATAGGTTGGTAGGTCAAGTTTTAGGAGAGGTTGGATCACTACCTGAGGTTTTTGTTGAACTGGAGGTAGGTGGCTATGCCCAATTGTCAATTTGCCTCCTGCCATGA

Predicted protein sequences of Glyma08g18240

Limit To All Plant Sequences

>Glyma08g18240.1   sequence type=predicted peptide   gene model=Glyma08g18240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSRKGLMEQDLSKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDERCPRPMCYKAYGSGKEDSPMCDVPGFENSKMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAISKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPIPERNFVSPPNMIVIRSFDVNKPGYEVDEIKGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIRCTPIYSRIVSLYAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPEVFVELEVNFFLLRRLLGVRTKGSERQGKVSKLAKGEMLMLNIGSMSTGARVVAVKNDLAKLQLTSPVCTSKGEKIALSRRVEKHWRLIGWGQIQAGITLDVPPAPHLS*

>Glyma08g18240.2   sequence type=predicted peptide   gene model=Glyma08g18240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSRKGLMEQDLSKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDERCPRPMCYKAYGSGKEDSPMCDVPGFENSKMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAISKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPIPERNFVSPPNMIVIRSFDVNKPGYEVDEIKGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIRCTPIYSRIVSLYAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPEVFVELEVGGYAQLSICLLP*

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