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Report for Sequence Feature Glyma08g18141

Feature Type:gene_model
Chromosome:Gm08
Start:13610477
stop:13613475
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g18141
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G16590AT Annotation by Michelle Graham. TAIR10: DNA-binding HORMA family protein | chr1:5673886-5674890 FORWARD LENGTH=215 SoyBaseE_val: 5.00E-24ISS
GO:0006974GO-bp Annotation by Michelle Graham. GO Biological Process: response to DNA damage stimulus SoyBaseN/AISS
GO:0007094GO-bp Annotation by Michelle Graham. GO Biological Process: mitotic cell cycle spindle assembly checkpoint SoyBaseN/AISS
GO:0010224GO-bp Annotation by Michelle Graham. GO Biological Process: response to UV-B SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
PTHR11842Panther MITOTIC SPINDLE ASSEMBLY CHECKPOINT PROTEIN MAD2 JGI ISS
PTHR11842:SF10Panther MITOTIC SPINDLE ASSEMBLY CHECKPOINT PROTEIN MAD2B JGI ISS
UniRef100_G7IH36UniRef Annotation by Michelle Graham. Most informative UniRef hit: Mitotic spindle assembly checkpoint protein MAD2B n=1 Tax=Medicago truncatula RepID=G7IH36_MEDTR SoyBaseE_val: 3.00E-54ISS
UniRef100_I1KU25UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1KU25_SOYBN SoyBaseE_val: 5.00E-77ISS

Expression Patterns of Glyma08g18141
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g18141 not represented in the dataset
Glyma08g18141 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g18141
ParalogEvidenceComments
Glyma15g40820 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g18141 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g170300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g18141
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g18141
>Glyma08g18141.1   sequence type=CDS   gene model=Glyma08g18141   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGCGAAGACAGAATCAAACTCCACAAGGCCAAATAGCTAGGGTTTTGGTTGAATTTTTTGGAGGTGCCTTTGAGAGGAGAAGGTATATGAATGTGGTGATTCAAAGGGCTCTCCATCGTCAGCTTAGGTATTACATGCATGCTACTGTTTCAGGGCTTCTACCCTCTATGCAAAAGTTGGGAATGGTGGAGAGAGTAGCTGTTATCTTCTTCAATGCTGACAATGTTCCATTGGAGAAATTTGCTGGTACAAGCAAGGAAGCAGACTTGTCGATCCCAACTGACACAAAACCGGGGCAGCAGCCTCCACTTATAACCCCTATCAAGTCAATGAGTAGTGAACCTCTGAATTTGCAATTGTACTTGGAGCATCCAAGTTTATTAGAATCATTGCTTTGA
Predicted protein sequences of Glyma08g18141
>Glyma08g18141.1   sequence type=predicted peptide   gene model=Glyma08g18141   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MERRQNQTPQGQIARVLVEFFGGAFERRRYMNVVIQRALHRQLRYYMHATVSGLLPSMQKLGMVERVAVIFFNADNVPLEKFAGTSKEADLSIPTDTKPGQQPPLITPIKSMSSEPLNLQLYLEHPSLLESLL*






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