SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G16570 | AT | Annotation by Michelle Graham. TAIR10: UDP-Glycosyltransferase superfamily protein | chr1:5670763-5673423 REVERSE LENGTH=465 | SoyBase | E_val: 0 | ISS |
| GO:0009058 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biosynthetic process | SoyBase | N/A | ISS |
| GO:0016126 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process | SoyBase | N/A | ISS |
| GO:0030244 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellulose biosynthetic process | SoyBase | N/A | ISS |
| GO:0046520 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sphingoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0048193 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport | SoyBase | N/A | ISS |
| GO:0016757 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups | SoyBase | N/A | ISS |
| KOG2941 | KOG | Beta-1,4-mannosyltransferase | JGI | ISS | |
| PTHR13036 | Panther | BETA1,4 MANNOSYLTRANSFERASE | JGI | ISS | |
| PF00534 | PFAM | Glycosyl transferases group 1 | JGI | ISS | |
| UniRef100_G7IH35 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Chitobiosyldiphosphodolichol beta-mannosyltransferase n=1 Tax=Medicago truncatula RepID=G7IH35_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MJ83 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MJ83_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma08g18130 not represented in the dataset |
Glyma08g18130 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma15g40830 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g170200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g18130.2 sequence type=CDS gene model=Glyma08g18130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTAGGGAAAAACGATGGAAAGAAGAGACGAAGAAGAGGGAGAGCGTGTGTAGTGGTTTTGGGTGACATTGGACGAAGCCCTCGAATGCAGTACGACGCTCTTTCACTCGCCAATCAGGCTTCCTTGGAGGTTGACATTGTTGCATATGGAGGTTCAGAGCCCCATACTGCACTTCTTGCCAACCCATCTATTCATATTTACGTAATGAAGCAGTGGTTAACAGCCAGTCAAAGTTTACCAAAGATACTTCGATCAATAATGCTTTTGTTGAAGCCATTGGTTCAATTTTGCATGCTTCTTTGGTTCCTTTGTGTAAAAATACCATCTCCTGATATTTTTATTGTCCAGAATCCTCCTTCAGTTCCAACCCTGGTGGCCGTAAAATGGGCCAGCTGGTTGAGAAATTCATCTTTTGTTATAGATTGGCATAATTTTGGGTATACTCTACTTGCACTGTCATTGGGAAGAAATAGTCATTTTGTCTCCTTATATAAATGGTTTGAGAAGCATTATGGAAAAATGGCAGATGCTTCTCTCTGTGTAACAAAAGCAATGCTGCATGAATTGGCTCAGAACTGGGGAATAAATGCTACAGTTTTGTATGATCTGCCTCCTGACATGTTTCATCCATCTTCACTGGAGGAGAGGCATAAGCATAAGTTGTTTTGCAGATTAAATGAGGACTTGTTTCAGCCTCTCGGTGTCAGAGATTGTGTTAGTAATGGAACCTCATTGATTGCTAGCCATCGCCAAAATGAAACTCTGTTTACAACTGAGTTTGGTTCAAACATATATTTGAAGCCAAATAGACCAGCACTTGTTGTAAGCAGTATGAGCTGGACACCAGACAAAGATTTTGCCATTCTCTTGGAAGCTGCTGTAATGTATGATAGACGTGTTGCTGCCATAATAGGTGAAGATGATTCAGTAGATGAAGAGGTCATGTGGAAAGAAATATCTGATGCAAAACAATGTTTATATCCCAGATTGTTATTCATCATAACTGGCAAAGGTCCAGAAAAAGAAAAGTATGAGGCAACAATAAAGGGAATGAAACTTAAACGTGTGGCATTTCGTACCATGTGGCTGTCAGCTGATGATTATCCATTACTGCTAGGATCAGCTGATCTAGGTGTTTGTCTGCATATGTCATCATCAGGATTAGACCTTCCAATGAAGGTTGTGGATATGTTTGGCTGTGGGCTGCCTGTTCGTGCTGTTTCATACTCTTGCATTAGAGAACTGGTTAGACTTGACAAAAATGGTCTTCTCTTCTCTTCTTCGTCTGAGCTAGCTGATGAACTTCTGCTTCTCTTCAAGGGATTTCCTGATGACTGTGAAGCTTTGGAGGTCCTCAAATATGGTGCATTAGAAACTGGTTCTTCAGCAAGGTGGGCTACTGAATGGGAAGAACAGGCAAAGCCGCTGATAACTGAGGTTATGTCAAGATTTTGA
>Glyma08g18130.2 sequence type=predicted peptide gene model=Glyma08g18130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLGKNDGKKRRRRGRACVVVLGDIGRSPRMQYDALSLANQASLEVDIVAYGGSEPHTALLANPSIHIYVMKQWLTASQSLPKILRSIMLLLKPLVQFCMLLWFLCVKIPSPDIFIVQNPPSVPTLVAVKWASWLRNSSFVIDWHNFGYTLLALSLGRNSHFVSLYKWFEKHYGKMADASLCVTKAMLHELAQNWGINATVLYDLPPDMFHPSSLEERHKHKLFCRLNEDLFQPLGVRDCVSNGTSLIASHRQNETLFTTEFGSNIYLKPNRPALVVSSMSWTPDKDFAILLEAAVMYDRRVAAIIGEDDSVDEEVMWKEISDAKQCLYPRLLFIITGKGPEKEKYEATIKGMKLKRVAFRTMWLSADDYPLLLGSADLGVCLHMSSSGLDLPMKVVDMFGCGLPVRAVSYSCIRELVRLDKNGLLFSSSSELADELLLLFKGFPDDCEALEVLKYGALETGSSARWATEWEEQAKPLITEVMSRF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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