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Report for Sequence Feature Glyma08g18080

Feature Type:gene_model
Chromosome:Gm08
Start:13586478
stop:13588836
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g18080
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G07720AT Annotation by Michelle Graham. TAIR10: Galactose oxidase/kelch repeat superfamily protein | chr3:2465439-2467033 FORWARD LENGTH=329 SoyBaseE_val: 9.00E-166ISS
GO:0009627GO-bp Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance SoyBaseN/AISS
GO:0009697GO-bp Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process SoyBaseN/AISS
GO:0010043GO-bp Annotation by Michelle Graham. GO Biological Process: response to zinc ion SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR23244Panther KELCH REPEAT DOMAIN JGI ISS
PTHR23244:SF16Panther JASMONATE INDUCIBLE PROTEIN-RELATED JGI ISS
PF01344PFAM Kelch motif JGI ISS
UniRef100_G7IH11UniRef Annotation by Michelle Graham. Most informative UniRef hit: Nitrile-specifier protein n=1 Tax=Medicago truncatula RepID=G7IH11_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1KU18UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KU18_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma08g18080
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g18080 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g169800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g18080
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g18080
>Glyma08g18080.1   sequence type=CDS   gene model=Glyma08g18080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGTGGTTCATGGCAGTTGGGTCAAGCTTGATCAAAGAGGAGAAGGGCAAGGAGCGAGAAGCTCACATGCTATAGCCATAGTAGCACAGAAGGTGTATGCATTTGGTGGCGAATTCGTGCCACGTGTCCCCGTTGATAACAAACTTCACGTGTTCGACCTAGAGACTTTGACTTGGTCCGTGGCTGATGCATCAGGGGATGCCCCACCGCCACGTGTCGGTGTCACAATGGCCGTAGTGGGAGAAACCATATATGTCTTTGGTGGAAGAGATGGTGAACACAAAGAGCTCAATGAGCTCTATTCTTTTGACACAAGGGCCAACAAATGGGCCTTGATTTCAAGTGGCGATATTGGGCCTCCTCACCGGAGCTACCACTCCATGACCGCAGATGACCAACACGTGTATGTTTTCGGTGGTTGTGGGGTCCACGGGAGGCTTAATGACTTGTGGGCTTTTGATGTTGTTGAGAACAAGTGGGTGGAGTTTCCTTCTCCCGGTGAGAATTGCAAGGGGAGAGGTGGGCCGGGCTTGGTTGTGGCTCGAGGGAAAATATGGGTTGTGTATGGCTTCGCTGGAATGGAGATGGATGATGTGCATTGCTTTGATCCAGCCCAGAAAACTTGGGCCCAAGTTGAGACTAGTGGGCAAAAGCCCACCGCCCGCAGTGTGTTTTGCAGTTTCAGTGATGGGAAACATATAATTGTGTATGGTGGGGAAATTGATCCTAGCGACCAAGGTCACATGGGTGCTGGTCAATTTTCTGGTGAGGTTTATGCATTGGACATGGAGACACTAGCATGGAAGAGGTTGGAGGATAAGGTGGATTTCGGTGGCCATCCTGGGCCCCGAGGGTGGTGTGCTTTTGCCAGAGCTTGGCGGGGCGGCCACGAGGGGTTGTTGGTGTATGGTGGCAACTCTCCTAGTAATGATAGGCTTGATGACATCTTCTTCCTTGCTCTTTCTCAAGGGTTGGTGAAATAG
Predicted protein sequences of Glyma08g18080
>Glyma08g18080.1   sequence type=predicted peptide   gene model=Glyma08g18080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVVHGSWVKLDQRGEGQGARSSHAIAIVAQKVYAFGGEFVPRVPVDNKLHVFDLETLTWSVADASGDAPPPRVGVTMAVVGETIYVFGGRDGEHKELNELYSFDTRANKWALISSGDIGPPHRSYHSMTADDQHVYVFGGCGVHGRLNDLWAFDVVENKWVEFPSPGENCKGRGGPGLVVARGKIWVVYGFAGMEMDDVHCFDPAQKTWAQVETSGQKPTARSVFCSFSDGKHIIVYGGEIDPSDQGHMGAGQFSGEVYALDMETLAWKRLEDKVDFGGHPGPRGWCAFARAWRGGHEGLLVYGGNSPSNDRLDDIFFLALSQGLVK*






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