Glyma08g18033 - SoyBase

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Report for Sequence Feature Glyma08g18033

Feature Type:	gene_model
Chromosome:	Gm08
Start:	13555792
stop:	13559427
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g18033

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G12900	AT	Annotation by Michelle Graham. TAIR10: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein \| chr3:4104576-4106112 FORWARD LENGTH=357	SoyBase	E_val: 8.00E-151	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0071281	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion	SoyBase	N/A	ISS
GO:0071369	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to ethylene stimulus	SoyBase	N/A	ISS
GO:0071732	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to nitric oxide	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0016706	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	SoyBase	N/A	ISS
KOG0143	KOG	Iron/ascorbate family oxidoreductases	JGI		ISS
PTHR10209	Panther	FE(II)/ ASCORBATE OXIDASE SUPERFAMILY	JGI		ISS
PTHR10209:SF55	Panther	OXIDOREDUCTASE, 2OG-FE(II) OXYGENASE FAMILY PROTEI	JGI		ISS
PF03171	PFAM	2OG-Fe(II) oxygenase superfamily	JGI		ISS
UniRef100_G7IGZ5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 1-aminocyclopropane-1-carboxylate oxidase n=1 Tax=Medicago truncatula RepID=G7IGZ5_MEDTR	SoyBase	E_val: 6.00E-179	ISS
UniRef100_UPI0002338E43	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002338E43 related cluster n=1 Tax=unknown RepID=UPI0002338E43	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g18033

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g18033 not represented in the dataset	Glyma08g18033 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g18033

Paralog	Evidence	Comments
Glyma15g41000	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g18033 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g169300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g18033

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g18033

Limit To All Plant Sequences

>Glyma08g18033.1   sequence type=CDS   gene model=Glyma08g18033   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCTAAGTTTCAACACTTCAAATTCCTTGTATGACTTTGTGGTTAGAGAGGGCAATGGTGTGAAGGGTGTGTCAGACTTAGGTTTACCAGAGGTGCCAGATAGGTACATACAACCCCCCGAGGAGCGAATCAACAAGCAAGAATCAAGGACATGTGATGCTCCACCCATTGACTTGTCAAAGCTCAATGGGTTAGAGCATGAGAAAGTGGTGGATGAGATTGTTAGAGCAGCTGAGACTCTTGGCTTCTTTCAGGTGGTGAACCATGGTGTGCCTTTGGAGTTATTGGAATCACTTAAACATACAGCTCACAAATTTTTCAGCTTGCCACTAGAGAAGAAAACTTTGTACCGCGCCGGAGTTAGCCCAGCAGGGCCAGTCACAAGACTTGCGACTAGCTTTGTACCTGAGAAAGAGAAGACATGGGAATGGAAGGACTATATCAGTATGATATATAGAAGTGACGAAGAAGCTCTTCAGTATTGGCCTAATCTGTGCAGGGAACTAGTGCTTGAGTATTTGAAATTATCATCCAAGATGGTTAGAGGCATCGTGGAAATCTTGATACGTAACCTTGGGGTAACAATAGATGACTCAAAAACTGAACAAATTATGGGTGATAAGGTAGTTAACTTTAACTACTACCCACCATGTCCAAATCCAGAGCTCACAGTAGGACTAGGGCGCCACTCAGACTTGGGAACTATTACAGTGTTGCTCCAAGATGAAATTGGAGGTTTATATGTCAAAATGGAAGAAGACAATGATGCTGGAAAAGAAGAGTGGTTATTAATTCCACCTATCCCCGGAGCCCTAGTCATCAATATTGGTGACATTTTACAGATACTGAGCAATGGGAAGTACAAGAGTGCTGAACACCGAACAACAACAACTAGCACCAGAGCCAGGGTATCAGTTCCATTATTTATTCTGCCTATAGCTACAGAGAGGATTGGCCCATTTCCAGAGGCAGTGAAGAATGTTGGGTTTGCTCGATACAGGGAAGTTCTAATGCAGGATTACATGAGCAAGTACTTTGGAAATGCTCATGAAGGAAAGAAGAAGATTATTGATTTTGCAAGGATCAACTCTGCCTAA

Predicted protein sequences of Glyma08g18033

Limit To All Plant Sequences

>Glyma08g18033.1   sequence type=predicted peptide   gene model=Glyma08g18033   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALSFNTSNSLYDFVVREGNGVKGVSDLGLPEVPDRYIQPPEERINKQESRTCDAPPIDLSKLNGLEHEKVVDEIVRAAETLGFFQVVNHGVPLELLESLKHTAHKFFSLPLEKKTLYRAGVSPAGPVTRLATSFVPEKEKTWEWKDYISMIYRSDEEALQYWPNLCRELVLEYLKLSSKMVRGIVEILIRNLGVTIDDSKTEQIMGDKVVNFNYYPPCPNPELTVGLGRHSDLGTITVLLQDEIGGLYVKMEEDNDAGKEEWLLIPPIPGALVINIGDILQILSNGKYKSAEHRTTTTSTRARVSVPLFILPIATERIGPFPEAVKNVGFARYREVLMQDYMSKYFGNAHEGKKKIIDFARINSA*

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