Glyma08g17980 - SoyBase

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Report for Sequence Feature Glyma08g17980

Feature Type:	gene_model
Chromosome:	Gm08
Start:	13498627
stop:	13501478
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g17980

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G12890	AT	Annotation by Michelle Graham. TAIR10: activator of spomin::LUC2 \| chr3:4099223-4100277 FORWARD LENGTH=251	SoyBase	E_val: 1.00E-44	ISS
GO:0010182	GO-bp	Annotation by Michelle Graham. GO Biological Process: sugar mediated signaling pathway	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
PF06203	PFAM	CCT motif	JGI		ISS
UniRef100_G7ITD4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: CCT n=1 Tax=Medicago truncatula RepID=G7ITD4_MEDTR	SoyBase	E_val: 2.00E-112	ISS
UniRef100_I1MJ96	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MJ96_SOYBN	SoyBase	E_val: 1.00E-164	ISS

Expression Patterns of Glyma08g17980

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g17980

Paralog	Evidence	Comments
Glyma15g41030	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g17980 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g168900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g17980

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g17980

Limit To All Plant Sequences

>Glyma08g17980.2   sequence type=CDS   gene model=Glyma08g17980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCCCTCTCACCCTCTTCCATGGCTTCAATCCCACAATTCTATCAAAACTACACGTTCACCACTCACGATCTTTCCGACTACCCTACCCCTCTTCTCAATGGCGGTGGTGGCAGCAACGACATCGTTAATGCGTCGGTTATGGACACCACCACCGTGTGGGGTGGTGGGCAAGATAGCTTGATTAATATTCCTGTGCTGGATATGAACAATGGTGCACTTGATCATATTGTGTCGCTTGATTGCGACACCATGGCTTGTGCTGCTAATTGGATGCCATCTTTTTCTGAGCAGCTTGGGGGGTTTTCGGATTTGGCCATTTCGGACTGCAAAATGGGGTTCTATGGAGGGTTTCAGAGTTTCAACAACAGCAGATCGTACCAACCTCATGTTGGGGAGTTTGGAGATGAATGTTGTGGGTTTGTGGAGGATGTTAAGCCACCTGCTTATCCTAATGCTGCCAGAGAAAATTGGGGAATTCAAGGTAATCAAATGGCAGCAATTGAAGAGCCTAACATAAAGGTAGGAAGGTACTCAGAAGAAGAGAGGAAAGAAAGAATTCTCCGATATTTGAAGAAAAGAAATCAAAGAAACTTTAACAAAACCATCAAGTACGCATGTCGGAAAACCTTAGCTGATAGGCGAGTAAGGGTTAGGGGAAGGTTTGCAAGAAACAATGAGCTTTGTGAAGAAGACATGGCAACAAAAAAGCATCAGAATCATCATCACCACAAAGGAGATTTTTATGGTGGCGATTCAATCCAGTTCCAGTTAAAGAATGATGAGGAGGATTGGCTTCAAGAGGCCATGGCAAGTCTAGTGTATTTATCTCATTCTTCACCGGAAGATATGTAA

Predicted protein sequences of Glyma08g17980

Limit To All Plant Sequences

>Glyma08g17980.2   sequence type=predicted peptide   gene model=Glyma08g17980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPLSPSSMASIPQFYQNYTFTTHDLSDYPTPLLNGGGGSNDIVNASVMDTTTVWGGGQDSLINIPVLDMNNGALDHIVSLDCDTMACAANWMPSFSEQLGGFSDLAISDCKMGFYGGFQSFNNSRSYQPHVGEFGDECCGFVEDVKPPAYPNAARENWGIQGNQMAAIEEPNIKVGRYSEEERKERILRYLKKRNQRNFNKTIKYACRKTLADRRVRVRGRFARNNELCEEDMATKKHQNHHHHKGDFYGGDSIQFQLKNDEEDWLQEAMASLVYLSHSSPEDM*

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