Glyma08g17960 - SoyBase

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Report for Sequence Feature Glyma08g17960

Feature Type:	gene_model
Chromosome:	Gm08
Start:	13468294
stop:	13475079
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g17960

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G45190	AT	Annotation by Michelle Graham. TAIR10: Cyclin family protein \| chr5:18277808-18280733 REVERSE LENGTH=579	SoyBase	E_val: 0	ISS
GO:0000079	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of cyclin-dependent protein kinase activity	SoyBase	N/A	ISS
GO:0000394	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0006366	GO-bp	Annotation by Michelle Graham. GO Biological Process: transcription from RNA polymerase II promoter	SoyBase	N/A	ISS
GO:0006486	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein glycosylation	SoyBase	N/A	ISS
GO:0008284	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of cell proliferation	SoyBase	N/A	ISS
GO:0009615	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to virus	SoyBase	N/A	ISS
GO:0009630	GO-bp	Annotation by Michelle Graham. GO Biological Process: gravitropism	SoyBase	N/A	ISS
GO:0009908	GO-bp	Annotation by Michelle Graham. GO Biological Process: flower development	SoyBase	N/A	ISS
GO:0010090	GO-bp	Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis	SoyBase	N/A	ISS
GO:0048366	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf development	SoyBase	N/A	ISS
GO:0050792	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of viral reproduction	SoyBase	N/A	ISS
GO:0051726	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0004693	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cyclin-dependent protein kinase activity	SoyBase	N/A	ISS
GO:0019901	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase binding	SoyBase	N/A	ISS
KOG0834	KOG	CDK9 kinase-activating protein cyclin T	JGI		ISS
PTHR10026	Panther	CYCLIN	JGI		ISS
PTHR10026:SF10	Panther	CYCLIN-RLEATED	JGI		ISS
PF00134	PFAM	Cyclin, N-terminal domain	JGI		ISS
UniRef100_B9RI21	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cyclin-L2, putative n=1 Tax=Ricinus communis RepID=B9RI21_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI00023383F1	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023383F1 related cluster n=1 Tax=unknown RepID=UPI00023383F1	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g17960

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g17960

Paralog	Evidence	Comments
Glyma15g41040	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g17960 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g168800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g17960

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g17960

Limit To All Plant Sequences

>Glyma08g17960.1   sequence type=CDS   gene model=Glyma08g17960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGGATTGTTGCTTGGTGATGCCTCTCATCATGGAACTTCTCAAGGTGTTTCTCAGAGATACTCTGAAGAGAAGCTGGAGGATGGTTCGAGGTGGTACTTTGCTAGGAAGGAGATTGAAGAATACTCACCATCCAAACACGATGGCATAGATTTGAAGAAAGAAACTTACCTACGCAAATCATACTGTACATTTCTGCAAGACTTAGGCATGAGACTTAAAGTGCCTCAGGTAACTATTGCAACTGCAATAATATTTTGTCATCGATTCTTTCTCCGGCAGTCCCATGCAAAGAATGACCGGAGGACCATTGCAACAGTATGCATGTTTCTTGCTGGGAAGGTTGAAGAAACTCCTCGCCCACTAAAAGATGTAATTCTTATTTCATATGAAATTATACATAAGAAGGATCCAGCGGCAATTATGAGAATAAAACAAAAGGATGTGTATGAACAGCATAAAGAATTAATTTTACTGGGAGAGAGGGTTGTTCTTGCAACTCTTGGTTTTGATCTGAATGTGCATCATCCTTATAAACCTCTTGTTGAGGCAATAAAGAAATTCAAAGTAGCTCAAAATGCCCTAGCTCAAGTTGCGTGGAATTTTGTAAATGATGGACTTCGGACATCACTTTGCTTGCAATTTAAGCCCCATCACATTGCAGCTGGAGCCATATTCCTTGCTGCCAAGTTTCTGAAGGTGAAGCTACCATCAGATGGGGAGAAGGTCTGGTGGCAAGAGTTTGATGTCACTCCACGCCAATTGGAGGAAGTTAGTAATCAAATGTTAGAGCTGTATGAACAAAATCGAATGCCACCTTCCAACGATGTCGAAGGAGGTGGGACTTCCAATCAGACCACTGCAAAAGCTCCAATTACTAATGATGAAACTGCAGCTGCAAAGAGTAATTCCCAGTCCGGAGCCACAAGACTGGAAACATCAAAGCCTGTGTCTTCTATGGCCATGTTTGATTCATCAGTCCCAAATCATGTGGGGCGCCCCATCTCAAACCATGGTAGAAGTGGTGATTATGGGAGCACAGAAATGAAACACAGGGTGGAAGGTGATGCCAAAGGCAATCAATATCCTGAGAGGGAATCTCTACCATTTAAGGAAAACTCACATGAAGCTCAAGACGTGGTGAAATCTCGATCTGATAATGGTGAAAAAGAGCACGAAAGCAATGCTGGAGGGACTGAAACAAAAGAACTGACTGAATTGAAAGACAAACATAATAGCAGAAACCTAGATCACAGAGAGGATGCATTTAGCCGGCCTCCTCAGGAAGCCGTTAAGAAAATTGATACAGACAAGGTAAAGGCTGCATTAGAAAAACGAAGGAAAGCAGCTGTTCATATAACTAAGAAAACAGATGTTATGGATGACGATGATCTCATTGAGAGGGAACTGGAAGATGGAATTGAACTGGCTCCTCAGAATGAGAAAAATAAGGAGAAGAGGCAAAGCTGGTCTAAGCCCTCTGACAGATCAGATTATGATAACATGCATGGAAGACATCAAGACCATGAAGATGAGCAATATCATGGAGTAAAGGGTTTGTCATCATATGAACCAGATCTAAGTGCTGTTGAAGAAGGGGAGGTATCCGCACTTGATGACATTGGTGTAGGGCTTCCATCACCTAAGTCAAGCAATCGCAAGAGAAAAGCAGGAAGCTCCCCTGAAAGAGGGGTGGAGGGGAAACGTCATAATTATGGCCCCGGGCCTCACCACAATAATCGATTTGATTACATGGAGGATCGAAACAAGGTCAGTCGGCTAGGCCATACTGAGAGGGACAGCAAAAGGCATGTACAGGAAAACCATGTTTGA

Predicted protein sequences of Glyma08g17960

Limit To All Plant Sequences

>Glyma08g17960.1   sequence type=predicted peptide   gene model=Glyma08g17960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGLLLGDASHHGTSQGVSQRYSEEKLEDGSRWYFARKEIEEYSPSKHDGIDLKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFLRQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVILISYEIIHKKDPAAIMRIKQKDVYEQHKELILLGERVVLATLGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGEKVWWQEFDVTPRQLEEVSNQMLELYEQNRMPPSNDVEGGGTSNQTTAKAPITNDETAAAKSNSQSGATRLETSKPVSSMAMFDSSVPNHVGRPISNHGRSGDYGSTEMKHRVEGDAKGNQYPERESLPFKENSHEAQDVVKSRSDNGEKEHESNAGGTETKELTELKDKHNSRNLDHREDAFSRPPQEAVKKIDTDKVKAALEKRRKAAVHITKKTDVMDDDDLIERELEDGIELAPQNEKNKEKRQSWSKPSDRSDYDNMHGRHQDHEDEQYHGVKGLSSYEPDLSAVEEGEVSALDDIGVGLPSPKSSNRKRKAGSSPERGVEGKRHNYGPGPHHNNRFDYMEDRNKVSRLGHTERDSKRHVQENHV*

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