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Report for Sequence Feature Glyma08g17920

Feature Type:gene_model
Chromosome:Gm08
Start:13446082
stop:13446866
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g17920
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G47550AT Annotation by Michelle Graham. TAIR10: Cystatin/monellin superfamily protein | chr5:19286596-19286964 REVERSE LENGTH=122 SoyBaseE_val: 2.00E-18ISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0005618GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cell wall SoyBaseN/AISS
GO:0004869GO-mf Annotation by Michelle Graham. GO Molecular Function: cysteine-type endopeptidase inhibitor activity SoyBaseN/AISS
PF00031PFAM Cystatin domain JGI ISS
UniRef100_C6TCH0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TCH0_SOYBN SoyBaseE_val: 5.00E-86ISS
UniRef100_G7JDY3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cysteine proteinase inhibitor n=1 Tax=Medicago truncatula RepID=G7JDY3_MEDTR SoyBaseE_val: 7.00E-21ISS

Expression Patterns of Glyma08g17920
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g17920 not represented in the dataset
Glyma08g17920 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g17920 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g168600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g17920
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g17920
>Glyma08g17920.1   sequence type=CDS   gene model=Glyma08g17920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATAAAACTAGAGTGTCTTCTTCTGGTGCTTGTTCTCATGACTTCTGTGGTTGCTAGAAAAGAACCTTTGCTCGGACGTTGGAGCCCTATCAAGAACATCAACGACCCTAAAGTGATAGAGATCGCAAATTACGCCATTGCAACTTTTGATAAGCGATTCGGTACAAAGAAGAAGTTAGAGAAGATGATAGAGGGTGAGACTCGAACAGTAGAAGGGTTAAAGTATAAGACTCGGATAGTAGCAGGGATGGACTACTTCCTCATCTTCAGAGCCAATGATGAGTACGGTGAATTTCAAAATTACGGAGCAACTGTGCGAGTAATCGAATCGCTCCATTTCAGAAACCTCACTGGCTTTGTTCCTGCCAATTCTTAA
Predicted protein sequences of Glyma08g17920
>Glyma08g17920.1   sequence type=predicted peptide   gene model=Glyma08g17920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIKLECLLLVLVLMTSVVARKEPLLGRWSPIKNINDPKVIEIANYAIATFDKRFGTKKKLEKMIEGETRTVEGLKYKTRIVAGMDYFLIFRANDEYGEFQNYGATVRVIESLHFRNLTGFVPANS*






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