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Report for Sequence Feature Glyma08g17905

Feature Type:gene_model
Chromosome:Gm08
Start:13438563
stop:13440866
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g17905
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G80960AT Annotation by Michelle Graham. TAIR10: F-box and Leucine Rich Repeat domains containing protein | chr1:30416065-30418220 FORWARD LENGTH=486 SoyBaseE_val: 5.00E-22ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF08387PFAM FBD JGI ISS
UniRef100_G7IJB8UniRef Annotation by Michelle Graham. Most informative UniRef hit: F-box family protein n=1 Tax=Medicago truncatula RepID=G7IJB8_MEDTR SoyBaseE_val: 2.00E-67ISS
UniRef100_UPI000233B96BUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233B96B related cluster n=1 Tax=unknown RepID=UPI000233B96B SoyBaseE_val: 8.00E-116ISS

Expression Patterns of Glyma08g17905
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g17905 not represented in the dataset
Glyma08g17905 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g17905 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g168500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g17905
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g17905
>Glyma08g17905.1   sequence type=CDS   gene model=Glyma08g17905   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTAGGAGAAGAGGCAAAAAATATTAGTGTCACTGAAGGAAAAGATTTGATCAGCGCTCTTCCCGATCCACTCGTTGGAGCTATCATTTCTCTCCTTCCTAACACTGAAGGTGTAAGAACCTGTGTTTTTTCCAAGCGATGGAAAAAGGCGTGGATGCATATGTCACATCTTAACATTGATCAGGTCCAAATGATGAAACCTTTTATCCAAGCTAATCTCTGTGGGGTACACCATAAGAGGTGTGTTGATGTGCCTTTTCAACATCAAAGGGTAGATCCCAACGAAAATTATGACTTGGATGTAATTGATAAAACAGAAAGATTGATTATCTCAGTGTTGAATTCACACTCTCATCCCTTGGAAAGTTGCAATATTCGACACCTACCCGAAAGTTGTGCGAGTGGTAATGTTGTTTTGTTGATGAAGAAGCTTCTCAAGGAAAAAAATTTGAAAAAACTTTCCATGGAGCAAACTGATCCTATTCATTGGGACATCTTGCAAAATGCTCCACAAGGTGTGAAATACCATGAAATGACTATAGATTTGCCTTTTGAGATTTTCTCAAGTTTTGAGGAACTTGAGTTGAAGAACTATTACCTCAAGACAAAACCATCAAGTGGTGATTTTGCTCAAGTTCTAAAAAAATTGACCTTTAAGAATATGATGGTTGATAAAGATGATTGGGAAGGAATTATGTCTTATTGCTTGTGTCTCGAAAATTTAACCATTGATAATTGTATGATGGAAATTATTAAGATAAATAACCCAAGACTCAAGTTTTTAAGAATTTGTAGAATGGAGGTGATTAAGATTGATGTCTCTGCTATTAACCTTGAGATCATTGAGATTGATACTGTTGTTTGTAAGCCTCAAAAGGTTACTTTTGAGACCCCAAAAGTTCATTTCCTTCGTTCTTGTTTTGATGCAATTGGAGGGCAAAATGATTGCTGGGTTCGAAGCAAGCTTTTGCAATCAGAAAATATTCTACATGCTTGCTGTAGCAATAAGATACCTCAAGGTTCAACTTCAAGTTTTGCCAATATATTTGAGAACCTTGCTACGTTATGCATTGGTTTAGATTTGGAGAAGCTTAATAATGCCATGTCTCTCTACTCAACTCTGAAGTCATGCCCTATGTTGCAAACTCTTGAAATTAATATTCAGGCTGATGATGATGCATGGGATTATCATGGTGATGAAGATGAGGAGGAGGCTGATGGTGATGCAAGGGATTATGATGGTGATGAACATAATGAGGAGGGTTATTTTCCTTACCCTAAAATCTTCTTTTGGATGAACATGGACCCCTGTGATTGTATAAATCACAAACTAAAGACCCTTAGCATAAAGGGATTTGCAGGAGAAGAACTTGAGGTGGAGTTTCTTAAATACATAATAACAACAGCTAAAGTGATGAAGAAAATTACTATTTGGTTTGTTGATAATTGTTCATGGGCACAAGCCACTAAAACAAGGTGTTTGATGTCATTTAAGAGTATCTCTCCGAACTTGTCCATCATTCTCAATCCTGGGCCAATATACATGGCAAATGGGGACGGAAACTTTGAAACATGGATGTCTACTCTAAGAAACTAG
Predicted protein sequences of Glyma08g17905
>Glyma08g17905.1   sequence type=predicted peptide   gene model=Glyma08g17905   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVGEEAKNISVTEGKDLISALPDPLVGAIISLLPNTEGVRTCVFSKRWKKAWMHMSHLNIDQVQMMKPFIQANLCGVHHKRCVDVPFQHQRVDPNENYDLDVIDKTERLIISVLNSHSHPLESCNIRHLPESCASGNVVLLMKKLLKEKNLKKLSMEQTDPIHWDILQNAPQGVKYHEMTIDLPFEIFSSFEELELKNYYLKTKPSSGDFAQVLKKLTFKNMMVDKDDWEGIMSYCLCLENLTIDNCMMEIIKINNPRLKFLRICRMEVIKIDVSAINLEIIEIDTVVCKPQKVTFETPKVHFLRSCFDAIGGQNDCWVRSKLLQSENILHACCSNKIPQGSTSSFANIFENLATLCIGLDLEKLNNAMSLYSTLKSCPMLQTLEINIQADDDAWDYHGDEDEEEADGDARDYDGDEHNEEGYFPYPKIFFWMNMDPCDCINHKLKTLSIKGFAGEELEVEFLKYIITTAKVMKKITIWFVDNCSWAQATKTRCLMSFKSISPNLSIILNPGPIYMANGDGNFETWMSTLRN*






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