Glyma08g17861 - SoyBase

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Report for Sequence Feature Glyma08g17861

Feature Type:	gene_model
Chromosome:	Gm08
Start:	13319188
stop:	13322619
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g17861

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G79180	AT	Annotation by Michelle Graham. TAIR10: myb domain protein 63 \| chr1:29786509-29787589 FORWARD LENGTH=294	SoyBase	E_val: 4.00E-83	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009751	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salicylic acid stimulus	SoyBase	N/A	ISS
GO:0009753	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus	SoyBase	N/A	ISS
GO:0010413	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process	SoyBase	N/A	ISS
GO:0045492	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:2000652	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of secondary cell wall biogenesis	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
KOG0048	KOG	Transcription factor, Myb superfamily	JGI		ISS
PTHR10641	Panther	MYB-RELATED	JGI		ISS
PF00249	PFAM	Myb-like DNA-binding domain	JGI		ISS
UniRef100_I1KU02	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KU02_SOYBN	SoyBase	E_val: 2.00E-167	ISS
UniRef100_I3RSY1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: R2R3MYB transcription factor (Fragment) n=1 Tax=Lotus japonicus RepID=I3RSY1_LOTJA	SoyBase	E_val: 7.00E-101	ISS

Expression Patterns of Glyma08g17861

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g17861 not represented in the dataset	Glyma08g17861 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g17861

Paralog	Evidence	Comments
Glyma15g41255	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g17861 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g168100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g17861

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g17861

Limit To All Plant Sequences

>Glyma08g17861.1   sequence type=CDS   gene model=Glyma08g17861   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAAAGGAAGAGCACCATGCTGTGATAAGACTCAAGTGAAGAGAGGTCCTTGGAGCCCTGCAGAAGACCTTAAACTCATAGCCTTCATCCAGAAATATGGCCACGAAAACTGGCGTGCTCTCCCAAAACAAGCAGGGCTTCTGCGATGTGGGAAAAGTTGTCGCTTGAGATGGATCAATTATCTCAGGCCTGATGTGAAGAGAGGCAATTTTACACTAGAGGAAGAGGAAAACATAATAAGGCTACACAAAGCCTTGGGAAACAAGTGGTCGAAGATTGCATCACGTTTGCCTGGTAGGACTGACAATGAGATCAAGAATGTGTGGAACACCCACTTGAAGAAAAGATTGGCTCCAAAAAAAGGTTCAGAATCAAGTGCTGATGAATCCAAGCCAGAATCATCAATCACTTCCGCCTCTTCCTCATCATCTGAATCGTTTTTCTCTTATGAGAGACCAAATTCACCAAAGACCACAACACCTTGTAACAATGATCAATTTAATGACCAAGCAGAGAAATTATCAATTGAAGATAAAATGGAGCAGGATTCAGAAAAACAAGTGTCCAATGAACTTGCTAACATCACTGAGGATCCAAAAGGGTCATCAGTTTCATTGTCTTCTGATGAGTCAAACATAGTAAACACAAGCCAGATTGTTGAACACAAACCAGAAGAAGAACAATTGGCCTCTCCATTACCCTACTTAGGACATTATGATGTTGGAAGCATGTTAGAAGAGGTGGATAAACCAAACCAACTGATTGAAATTCCATGGGAGCCAGATTATGATTTTTGGAAGTTGTTAGATGATGATAACAGCCTTGAATCTTTTCAATCAAATGAAGTCCAATTAGGTGAGTTCCCAGCCATCCAAAACATCATTCTTGGAGAAGAGAGTGTTCATGATGCTGAAGCCAAGAAGTGGTCCCAAGACTTTGAGAATGAGTTTGGAGTAGTTGGTGAGATGAAGGAGTCAAACAAGGATCATTTCCTACCAAAGAACTATGCAGTTGAGCCAGAAATGGACCACACTCAAGCATTTGATTTTGATGACATTGACATGGCAAGGCCAGAATCTGAATTAGACTTGGGTTATATCCAATTATGGTCCTCTTGGCCTCAAAATAATAATAATAATAATAATAATAGTCTTTAG

Predicted protein sequences of Glyma08g17861

Limit To All Plant Sequences

>Glyma08g17861.1   sequence type=predicted peptide   gene model=Glyma08g17861   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGKGRAPCCDKTQVKRGPWSPAEDLKLIAFIQKYGHENWRALPKQAGLLRCGKSCRLRWINYLRPDVKRGNFTLEEEENIIRLHKALGNKWSKIASRLPGRTDNEIKNVWNTHLKKRLAPKKGSESSADESKPESSITSASSSSSESFFSYERPNSPKTTTPCNNDQFNDQAEKLSIEDKMEQDSEKQVSNELANITEDPKGSSVSLSSDESNIVNTSQIVEHKPEEEQLASPLPYLGHYDVGSMLEEVDKPNQLIEIPWEPDYDFWKLLDDDNSLESFQSNEVQLGEFPAIQNIILGEESVHDAEAKKWSQDFENEFGVVGEMKESNKDHFLPKNYAVEPEMDHTQAFDFDDIDMARPESELDLGYIQLWSSWPQNNNNNNNNSL*

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