Glyma08g17793 - SoyBase

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Report for Sequence Feature Glyma08g17793

Feature Type:	gene_model
Chromosome:	Gm08
Start:	13268802
stop:	13272542
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g17793

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G23180	AT	Annotation by Michelle Graham. TAIR10: cysteine-rich RLK (RECEPTOR-like protein kinase) 10 \| chr4:12138171-12140780 FORWARD LENGTH=669	SoyBase	E_val: 3.00E-56	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0006995	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to nitrogen starvation	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0004713	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF430	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF07714	PFAM	Protein tyrosine kinase	JGI		ISS
UniRef100_G7ZX63	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cysteine-rich receptor-like protein kinase (Fragment) n=1 Tax=Medicago truncatula RepID=G7ZX63_MEDTR	SoyBase	E_val: 8.00E-67	ISS
UniRef100_I1KTZ1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1KTZ1_SOYBN	SoyBase	E_val: 3.00E-123	ISS

Expression Patterns of Glyma08g17793

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma08g17793 not represented in the dataset	Glyma08g17793 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma08g17793 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g167300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g17793

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g17793

Limit To All Plant Sequences

>Glyma08g17793.1   sequence type=CDS   gene model=Glyma08g17793   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATCCCAAAATTTCAGATTTTGGCATGGCTAGAATTTTCACTCAAGAGTCAGATATAAACACTAAAAGGATTGTTGGGACATATGGTTACATGTCACCGGAATATGCAATGGAGGGAATTTTCTCTTTCGAATCTGATGTCTATGCTTTTGGAGTCTTGCTGCTAGAAATTATTAGTGGCAGAAAAAACAATACTGCTGAAGGGCCACTCAATCTAGTAGGACATGCTTGGGAGCTATGGAAACAAGGCCATGCACTAGACCTCTTAGATCCAACTTTAATAGAATCTTTCATTCAAAATGAAGTATTAAGATGCATTCATGTTGGTCTTTTATGTGTAGAAGAATGTGCAGCTGATCGCCCCAATATTTCAGAAATGATACCCATGTTAAACAGTGAAATTGCAACATTTCCATTGCCTAGAAGACCAGCATTTTACCGCGGAAAAAAGCTGGTTGAGGAATATGACTCTTTTATTGATAATGAAATCCATTCAGTGAATGGTTTAACTATTTCCAACATAGGTGGAAGATAA

Predicted protein sequences of Glyma08g17793

Limit To All Plant Sequences

>Glyma08g17793.1   sequence type=predicted peptide   gene model=Glyma08g17793   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNPKISDFGMARIFTQESDINTKRIVGTYGYMSPEYAMEGIFSFESDVYAFGVLLLEIISGRKNNTAEGPLNLVGHAWELWKQGHALDLLDPTLIESFIQNEVLRCIHVGLLCVEECAADRPNISEMIPMLNSEIATFPLPRRPAFYRGKKLVEEYDSFIDNEIHSVNGLTISNIGGR*

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