SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G64150 | AT | Annotation by Michelle Graham. TAIR10: RNA methyltransferase family protein | chr5:25668997-25670731 REVERSE LENGTH=377 | SoyBase | E_val: 1.00E-148 | ISS |
| GO:0006479 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein methylation | SoyBase | N/A | ISS |
| GO:0006783 | GO-bp | Annotation by Michelle Graham. GO Biological Process: heme biosynthetic process | SoyBase | N/A | ISS |
| GO:0032259 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methylation | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0008168 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity | SoyBase | N/A | ISS |
| GO:0008276 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein methyltransferase activity | SoyBase | N/A | ISS |
| KOG2904 | KOG | Predicted methyltransferase | JGI | ISS | |
| PTHR18895 | Panther | METHYLTRANSFERASE | JGI | ISS | |
| PTHR18895:SF7 | Panther | gb def: hypothetical protein [ureaplasma urealyticum] | JGI | ISS | |
| PF05175 | PFAM | Methyltransferase small domain | JGI | ISS | |
| UniRef100_G8A1A7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein hemK n=1 Tax=Medicago truncatula RepID=G8A1A7_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI00023383EE | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00023383EE related cluster n=1 Tax=unknown RepID=UPI00023383EE | SoyBase | E_val: 0 | ISS |
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Glyma08g17776 not represented in the dataset |
Glyma08g17776 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma15g41360 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.08g167200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma08g17776.1 sequence type=CDS gene model=Glyma08g17776 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATCTAACCTTAAGCAGTGTATACCGTCCCTATAGCTTCCCCACACTCCTCAAATCCTCTTCTTTCAGCACTCTGAGTAGACCCTTTTGTTCTTCAGCACTATCATCTCCCCCCACATGTGTGAAACCCCAAGTTCCCCTCTTTTTAAGACCACCCATTTACTCAACCAAGTTGTGTGAGCTCAAAAAATGGCATGATTGGGCCAAAGGTGTTGCCTTTTCAATTGGGTCAACTTTTGTGCACTCAGATAATGGGCGAGACTCAAGCATTTTGTTCAGGGAGATGAAGTGGCTCATGGAGGATGCTGTTGAAGACCATTCAATGATTGTGGATGATGAGAGGGTGAAAATGAGGATTGGAATAGATGAGCTATACTGCTTGTGGAAGCAAAGGATCCATGAGAGGAGACCCTTTCAGTATGTGGTTGGGTGTGAGCATTGGAGGGACTTGGTGTTAAGTGTCCAAGAAGGGGTCTTGATTCCAAGGCCTGAAACTGAACTTATTGTTGATTTTGTGTATGATGTGGTGTCAGAGAATGAGGATTTGAAAAGTGGTGTTTGGGCTGATTTGGGGACTGGAAGTGGTGCTCTTGCTATAGGTATTGGTAGGGTTTTGCGGAGTGAAGGAGGGAGGGTTGTTGCTACAGATTTAAGCCCTGTGGCTGTTGCTGTTGCAGCTTACAATGTGCAGAGATATTGCTTGCAGGACAAAATTGAATTAAGGGAAGGATCTTGGTTTGAACCATTAAAAGATATGGAAGGAAAGCTAGTGGGTCTTGTAAGTAACCCACCTTATATACCAAGTAAAGACATCTCTGGTCTACAAGCTGAAGTTGGTAGGCATGAACCTAGAGTTGCATTAGATGGAGGTACTGATGGCATGGATGCTCTTCTTCATCTTTGTGATGGGGCTGGTTTAATGTTGAAACCTGGTGGATTTTTTGCTTTTGAGACAAATGGAGAGCACCAGTGCAGGGCTCTGGTTGATTACATGGAAAATAATAGAAGTGGAAGCTTCTGCAATTTAGAAATACGTGCTGATTTTGCTGGTATTCAAAGATTTGTGATGGGTTTCCATCAATAG
>Glyma08g17776.1 sequence type=predicted peptide gene model=Glyma08g17776 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNLTLSSVYRPYSFPTLLKSSSFSTLSRPFCSSALSSPPTCVKPQVPLFLRPPIYSTKLCELKKWHDWAKGVAFSIGSTFVHSDNGRDSSILFREMKWLMEDAVEDHSMIVDDERVKMRIGIDELYCLWKQRIHERRPFQYVVGCEHWRDLVLSVQEGVLIPRPETELIVDFVYDVVSENEDLKSGVWADLGTGSGALAIGIGRVLRSEGGRVVATDLSPVAVAVAAYNVQRYCLQDKIELREGSWFEPLKDMEGKLVGLVSNPPYIPSKDISGLQAEVGRHEPRVALDGGTDGMDALLHLCDGAGLMLKPGGFFAFETNGEHQCRALVDYMENNRSGSFCNLEIRADFAGIQRFVMGFHQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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