Glyma08g17640 - SoyBase

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Report for Sequence Feature Glyma08g17640

Feature Type:	gene_model
Chromosome:	Gm08
Start:	13146888
stop:	13155008
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g17640

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G79570	AT	Annotation by Michelle Graham. TAIR10: Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain \| chr1:29932856-29937540 REVERSE LENGTH=1248	SoyBase	E_val: 0	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004712	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine/tyrosine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG0192	KOG	Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs	JGI		ISS
PTHR23257	Panther	SERINE-THREONINE PROTEIN KINASE	JGI		ISS
PTHR23257:SF68	Panther	SERINE/THREONINE PROTEIN KINASE	JGI		ISS
PF00564	PFAM	PB1 domain	JGI		ISS
PF07714	PFAM	Protein tyrosine kinase	JGI		ISS
UniRef100_B9RHZ4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Serine/threonine protein kinase, putative n=1 Tax=Ricinus communis RepID=B9RHZ4_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI0002338CE9	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002338CE9 related cluster n=1 Tax=unknown RepID=UPI0002338CE9	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g17640

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g17640

Paralog	Evidence	Comments
Glyma15g41470	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g17640 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g165800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g17640

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g17640

Limit To All Plant Sequences

>Glyma08g17640.1   sequence type=CDS   gene model=Glyma08g17640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGAAACATCAATACAATTCCATGGAACCTCGAAATGAGGAATTCCATTCTGCACCACAGTTGGTCCCGCAAGACCTTCGTGATGGCATGCATATCAATGCACGACCTCCGCCATTTAATATGTCAGAAAATAAACCTGTACTTAATTACTCCATACAGACTGGTGAGGAATTTGCTCTCGAGTTTATGAGAGATAGGGTGAATCTCAGGAAGCCTGCCTTTCCAAATGTTGTGGGTGATCCCAATTATTCAACAGGCTATATGGAATTGAAAGGCATTTTGGGCCACCCTGGATCAGAGAGTGGATCAGATATTTCTGTGCTCACAAAGGTTGAAAAGGGTCCAAAAGAGTTTGACAGAAGGAACTCTTCTCAACACCAGGACAGAAGTAATTATGGTTCAGCTCAATCCATTCCTAGATCTTCATCTAATCAAGACAGTTACCGAGTTCTTCATGGTACTTCCTCTTCTAGTGTTTCTGAAAGCGCATCAATGAAGATGAAGGTTCTATGCAGCTTTGGCGGTAAAATATTGCCACGGCCTAGTGATGGAAAGCTTAGATATGTTGGGGGTGAAACGCGTATTATTAGTATAAGACGGGACATACGTTTTCATGAGCTTATGCTTAAAACATCATCCATCTATAATGAAACTCATGTGATAAAGTATCAGCTCCCTGGAGAAGATCTTGATGCATTGGTTTCAGTATCTTCTGATGAGGATCTGCGGAATATGATGGAGGAATGTCATGATCTACAAGGCGGCCGAGAATCAAATAAGCTTAGGATTTTTCTGTTATCTATGAATGATTTGGATGATACTCAGTTCGGTATAGGTAGCATGGATGGTGATTCTGAAATTCAGTATGTCGTTGCTGTTAATGGTATGGGCATGGGTTCAAGAAACAACTCAATCCTTCGTGGTGAAAGTGGCTCTACTAATAACTTACATGAATTGAATGGACACAATAATGAGAGGGAGACCAACAGAGTTCTCATGGACACATTTGGTGTTAGCAGTTCATCCTTGACTGACAATGTTAAACCATCACTGGCTATTCAATCTTCACAACCAGTGCTTCCAATCTCCTCTAATGCTTATGAAACCCATCCATTGTTTTATGATGAGCAGATTATTCACCACGGGGAAGCTAGTCATTATCCACTACAGCATGGCCTTGGTCCTTCTAACAACTCCGCTCACAATCTTGAAGAGATTCCAGTTTCTATGCCAACTCATGGCCTTGTCAACCAAGGAATCATGAATGATGGACAAGCATCCAGTCAGTTGCAGGTACAAATTTCAGCTATGCCAGAAACGCTGGTGAAAAGAAAGGGTGATAATTTCATTCATACAGGCAATGACCCAGGAAAAGTTTTCCCCTTGGAAGCACCATATCCTATTCCTTTGCAGCCATTTGAGGGCAATTTGCATGCTAATATATCAGATGCTTCAGCTACAGCTGCTATATCAGAAGGGCTTCATCCTGCATTACCATCAAAGAACAAGGGTAAGCACCAGCAGTCTGAAGATGCCTCTTCATTAATTAGTAGTATGAATCCCACACAGACTCCCAAGTCTGTTGAAGATGACTTCTTTACTACAGCCACTGATGCATTCAGCCATGCTCATGTTGATGCCGAGTCCAATGTAATTGATTTCAGTTACCTTGAACCACCTCCACTTCCCAACAGAGTCTATTATTCAGAGAGAATTCCAAGGGAGCAGGCAGATTTGCTGAACCGATCTACAAAGTCAGATGATGCTCATGGTTCTCACTTACTCATGTCAGATTTGCTTTCTGACTTCAGCCAGAAAAATTCAATTACAGAATCCACTGACATGTTGCACAATGGGAATACATCAAATCTGAACATGATGTCCAGCTCAGCAGGAAAGCCTTTGCAAGCAGATGGCCATACCATTGATGATGGATTTGCCCCGCCACAGACATACAAACAGTTGCCTGATACAACAATTAAGGTGAATCCAAAGTTATCACAGCATGTGAATTCTGAGTCGAAGCAAGTGCTAGAAGATAATAAAGTTTCTAGAAATGAGGATCAGGTTCTTAGTTCTGAAAACGAAACCAAAGGCACCGAACATCTTGCATTTCATCAAGTTCCTTCTGTTGAACAAAATCAGAATCTAGCATCTAAACTTCCAGACCTCAATTTGGCTGAGGTTTCTACCAGGGAGTCTGATAATGATACTAAGGTCCAATCCCAGACTTTTCCTTTAACTGGAAACACAGGCCAAGATGTTTCTCAAGATTTTCCCCCAGAAGCTAAATCCAGACCTACTCAGGGTGACATTCTGATTGATATCGAGGACAGGTTTCCCCGTGATTTCCTTTATGACATGTTCTCCAAAGCAATAATTTCTGAAGATTCCTCAAGCATTGGTCCATTACCAACAGATAGAGCAGGTTTGAGCTTAAATATGGACAATCATGAGCCTAAACGTTGGTCATATTTTCAGAACTTGGCTCTAGAGGGGTTTGATAATGTATCTCTAATTGATCAGGATAATCTTGGTTTTTCGTCTGCTGTGAGAAAAGTACAAGAGGGGGATAGTAAATCTCAGCCATCTGCTCCTCAACCAGCTGGTGGTGTTTTGGCAGGACGCACAGATTCCCACCTAAATATTGGTGAAGAAAATCAGAAAAATGTACCTGTAGCAACTAAAACAGAAGCAAGTATCTTTCACCAAAAATATGAGCATTCCCAACTAAAGGGCAATGAAAATAAGAACATGGATGCCATAATGGAAAACATACGACCACAGGAGTCTGAATACCAGGATGACAAGAATGAACCGAGGAATGTGGTTGTAGCAGGGGAATTTGACACCAGTACTGTGCAGTTCATAAAGAATGAAGATCTTGAAGAGTTGCGAGAGCTGGGTTCTGGTACATTTGGGACTGTGTACCATGGAAAATGGAGAGGATCAGATGTTGCAATTAAAAGAATAAAGAAAAGCTGCTTCGCTGGTCGATCTTCAGAACAAGAAAGATTGACCATAGAGTTCTGGCGGGAAGCTGACATACTTTCCAAGCTTCACCATCCAAATGTGGTGGCATTTTATGGTGTAGTTCAGGATGGACCAGGAGCAACATTAGCGACTGTTACCGAGTTCATGGTGGATGGTTCTCTTAGGAATGTTTTGCTTCGTAAGGATAGGTATCTTGATCGCCGCAAGAGGCTGATAATTGCCATGGATGCTGCTTTCGGAATGGAATATTTACACTCAAAAAATATTGTGCATTTTGACTTGAAATGTGACAATTTGCTCGTGAACTTGAAGGATCCTATACGGCCAATATGCAAGGTTGGCGATTTTGGCCTATCAAAGATTAAGCGAAATACCTTGGTGTCTGGTGGTGTTCGTGGAACTCTACCTTGGATGGCACCAGAGCTGCTAAATGGTAGTAGCAATAAGGTCTCAGAAAAGGTTGATGTGTTCTCTTTTGGCATTGTCTTATGGGAGATTCTTACTGGTGATGAGCCATATGCTAATATGCACTATGGCGCAATCATAGGAGGCATTGTGAATAACACATTAAGACCTACAATCCCTAGTTATTGTGATCTTGAGTGGAAAACACTAATGGAGCAGTGTTGGGCACCTAATCCAGCAGTAAGGCCATCCTTTGCCGAAATTGCTCGCCGCTTGCGTGTGATGTCTGCAGCCGCTAGTCAGATCAAAGGACAGGGCCACAAGGCATCTAAATGA

Predicted protein sequences of Glyma08g17640

Limit To All Plant Sequences

>Glyma08g17640.1   sequence type=predicted peptide   gene model=Glyma08g17640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQKHQYNSMEPRNEEFHSAPQLVPQDLRDGMHINARPPPFNMSENKPVLNYSIQTGEEFALEFMRDRVNLRKPAFPNVVGDPNYSTGYMELKGILGHPGSESGSDISVLTKVEKGPKEFDRRNSSQHQDRSNYGSAQSIPRSSSNQDSYRVLHGTSSSSVSESASMKMKVLCSFGGKILPRPSDGKLRYVGGETRIISIRRDIRFHELMLKTSSIYNETHVIKYQLPGEDLDALVSVSSDEDLRNMMEECHDLQGGRESNKLRIFLLSMNDLDDTQFGIGSMDGDSEIQYVVAVNGMGMGSRNNSILRGESGSTNNLHELNGHNNERETNRVLMDTFGVSSSSLTDNVKPSLAIQSSQPVLPISSNAYETHPLFYDEQIIHHGEASHYPLQHGLGPSNNSAHNLEEIPVSMPTHGLVNQGIMNDGQASSQLQVQISAMPETLVKRKGDNFIHTGNDPGKVFPLEAPYPIPLQPFEGNLHANISDASATAAISEGLHPALPSKNKGKHQQSEDASSLISSMNPTQTPKSVEDDFFTTATDAFSHAHVDAESNVIDFSYLEPPPLPNRVYYSERIPREQADLLNRSTKSDDAHGSHLLMSDLLSDFSQKNSITESTDMLHNGNTSNLNMMSSSAGKPLQADGHTIDDGFAPPQTYKQLPDTTIKVNPKLSQHVNSESKQVLEDNKVSRNEDQVLSSENETKGTEHLAFHQVPSVEQNQNLASKLPDLNLAEVSTRESDNDTKVQSQTFPLTGNTGQDVSQDFPPEAKSRPTQGDILIDIEDRFPRDFLYDMFSKAIISEDSSSIGPLPTDRAGLSLNMDNHEPKRWSYFQNLALEGFDNVSLIDQDNLGFSSAVRKVQEGDSKSQPSAPQPAGGVLAGRTDSHLNIGEENQKNVPVATKTEASIFHQKYEHSQLKGNENKNMDAIMENIRPQESEYQDDKNEPRNVVVAGEFDTSTVQFIKNEDLEELRELGSGTFGTVYHGKWRGSDVAIKRIKKSCFAGRSSEQERLTIEFWREADILSKLHHPNVVAFYGVVQDGPGATLATVTEFMVDGSLRNVLLRKDRYLDRRKRLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLKDPIRPICKVGDFGLSKIKRNTLVSGGVRGTLPWMAPELLNGSSNKVSEKVDVFSFGIVLWEILTGDEPYANMHYGAIIGGIVNNTLRPTIPSYCDLEWKTLMEQCWAPNPAVRPSFAEIARRLRVMSAAASQIKGQGHKASK*

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