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Report for Sequence Feature Glyma08g17630

Feature Type:gene_model
Chromosome:Gm08
Start:13139585
stop:13143288
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma08g17630
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G08970AT Annotation by Michelle Graham. TAIR10: nuclear factor Y, subunit C9 | chr1:2883144-2883839 FORWARD LENGTH=231 SoyBaseE_val: 5.00E-72ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0043565GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding SoyBaseN/AISS
KOG1657 KOG CCAAT-binding factor, subunit C (HAP5) JGI ISS
PTHR10252Panther HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED JGI ISS
PTHR10252:SF6Panther CCAAT-BINDING TRANSCRIPTION FACTOR JGI ISS
PF00808PFAM Histone-like transcription factor (CBF/NF-Y) and archaeal histone JGI ISS
UniRef100_I1KTY0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KTY0_SOYBN SoyBaseE_val: 0ISS
UniRef100_I3TAY1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Nuclear transcription factor Y subunit C4 n=1 Tax=Medicago truncatula RepID=I3TAY1_MEDTR SoyBaseE_val: 5.00E-128ISS

Expression Patterns of Glyma08g17630
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g17630
ParalogEvidenceComments
Glyma15g41486 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g17630 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.08g165700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma08g17630
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma08g17630
>Glyma08g17630.1   sequence type=CDS   gene model=Glyma08g17630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATAAATCAGAGCAGACTCAACAGCAGCAGCAGCAACAACAGCATGTGATGGGAGTTGCCGCAGGGGCTAGCCAAATGGCCTATTCTTCTCACTACCCGACTGCTTCCATGGTGGCTTCTGGCACGCCCGCTGTAACTGCTCCTTCCCCAACTCAGGCTCCAGCTGCCTTCTCTAGTTCTGCTCACCAGCTTGCATACCAGCAAGCACAGCATTTCCACCACCAACAGCAGCAACACCAACAACAGCAGCTTCAAATGTTCTGGTCAAACCAAATGCAAGAAATTGAGCAAACAATTGACTTTAAAAACCATAGCCTTCCTCTTGCTCGGATAAAAAAGATAATGAAAGCTGATGAAGATGTCCGGATGATTTCAGCAGAAGCTCCGGTCATATTTGCAAAAGCTTGTGAAATGTTCATATTAGAGTTGACGTTGCGATCTTGGATCCACACAGAAGAGAACAAGAGGAGAACTCTACAAAAGAATGATATAGCAGCTGCTATTTCGAGAAACGATGTTTTTGATTTCTTGGTTGATATTATTCCAAGAGATGAGTTGAAAGAGGAAGGACTTGGAATAACCAAGGCTACTATTCCGTTAGTGGGTTCTCCAGCTGATATGCCATATTACTATGTCCCTCCACAGCATCCTGTTGTAGGACCACCTGGGATGATCATGGGCAAGCCCATTGGCGCTGAGCAAGCAACACTATATTCTACACAGCAGCCTCGACCTCCTGTGGCGTTCATGCCATGGCCTCATACACAACCCCTGCAACAGCAGCCACCCCAACATCAACAAACAGACTCATGA
Predicted protein sequences of Glyma08g17630
>Glyma08g17630.1   sequence type=predicted peptide   gene model=Glyma08g17630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDKSEQTQQQQQQQQHVMGVAAGASQMAYSSHYPTASMVASGTPAVTAPSPTQAPAAFSSSAHQLAYQQAQHFHHQQQQHQQQQLQMFWSNQMQEIEQTIDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRNDVFDFLVDIIPRDELKEEGLGITKATIPLVGSPADMPYYYVPPQHPVVGPPGMIMGKPIGAEQATLYSTQQPRPPVAFMPWPHTQPLQQQPPQHQQTDS*






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